PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c4_20290V3.4.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 323aa MW: 35049.4 Da PI: 9.2561

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c4_20290V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.6	3.3e-34	52	106	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt+eLHerFv+av+qLGG++kAtPk+++++m+vkgLtl+h+kSHLQkYRl Pp3c4_20290V3.4.p 52 KPRLRWTSELHERFVDAVTQLGGADKATPKSVMRVMGVKGLTLYHLKSHLQKYRL 106 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.559	49	109	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-33	50	109	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.84E-17	52	108	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-24	52	107	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-8	54	105	IPR001005	SANT/Myb domain
Pfam	PF14379	7.3E-23	170	216	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MYQMKKYSSL TVVPPQGQQH LMTSPHNQDH RSSSPYGVVL MSAGEVSPVD PKPRLRWTSE 60 LHERFVDAVT QLGGADKATP KSVMRVMGVK GLTLYHLKSH LQKYRLGKQQ SQREASGHEL 120 PYKDASHGTS NSWSSVELRK SGACMQGTST GASDGPPPTP TSQDPQNNAK INEALRLQVE 180 AQRRLQEQLE VQKTLQLRIE AHGKYLQTIL EKAKETLVSH MTSLAPDLQA AHAELTDLAS 240 YASLVPPHLD GVHPSGPFSH APDPTHQSGR IPNTSCQKSH SLPHLSAMQD GELRVSSAGI 300 VDQTTAALAN QGWSPTAPKH SA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	52	110	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	52	110	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-20	52	108	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	52	108	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	52	108	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	52	108	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	52	110	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	52	110	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	52	110	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	52	110	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	52	110	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	52	110	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024374325.1	0.0	protein PHR1-LIKE 3-like isoform X1
Swissprot	Q8LAJ7	2e-59	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A2K1KP92	0.0	A0A2K1KP92_PHYPA; Uncharacterized protein
STRING	PP1S201_75V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	9e-62	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c4_20290V3.4.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]