PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_17230V3.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 32637.2 Da PI: 9.2845 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.2 | 1.9e-08 | 15 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT e d+ + +a + +G + +W+ Ia+ + g+ + ++k ++ Pp3c4_17230V3.4.p 15 VWTREQDKEFENALNTYGEDtpnRWEEIASQVT-GKDAAEVKRHY 58 6*******************************9.**********9 PP | |||||||
2 | Myb_DNA-binding | 38.9 | 2e-12 | 145 | 189 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky Pp3c4_17230V3.4.p 145 PWSEEEHRLFLLGLAKFGKGDWRSISRNFVISRTPTQVASHAQKY 189 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.448 | 11 | 66 | IPR017884 | SANT domain |
SMART | SM00717 | 8.8E-9 | 12 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.28E-12 | 14 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-6 | 15 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-6 | 16 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.93E-8 | 16 | 58 | No hit | No description |
PROSITE profile | PS51294 | 16.96 | 137 | 194 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.59E-16 | 140 | 195 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-16 | 142 | 192 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.1E-10 | 142 | 192 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-11 | 143 | 188 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.9E-11 | 145 | 189 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.80E-10 | 145 | 190 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MADSQSSLTT ASGSVWTREQ DKEFENALNT YGEDTPNRWE EIASQVTGKD AAEVKRHYEI 60 LQEDINLIDS GRIALPSYRF SSLSLSEEGA ASDSPGVKKG ASFSAQVSGP NVNTNGNANG 120 NGNAASGGKG VSSKTSDQER RKGIPWSEEE HRLFLLGLAK FGKGDWRSIS RNFVISRTPT 180 QVASHAQKYF IRLNSINKDK RRSSIHDITS VNNGDAAQQG QGPITGQPGP GSAAGQPIQG 240 GMQSGIYPRQ QMIGQPPAVG APVMLPPPGH VSYGSRGHLP RPVMPGQQIG MAPHMSYPMS 300 QPVCGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-17 | 9 | 79 | 4 | 74 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.11360 | 0.0 | gametophore |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024373094.1 | 0.0 | transcription factor SRM1-like isoform X2 | ||||
Swissprot | Q9FNN6 | 5e-76 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A2K1KNU4 | 0.0 | A0A2K1KNU4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S13_201V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 9e-57 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_17230V3.4.p |
Publications ? help Back to Top | |||
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