PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_16540V3.1.p
Common NamePHYPADRAFT_175642
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 295aa    MW: 31808.6 Da    PI: 6.9568
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_16540V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.19.8e-3449103155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kprlrWtpeLHerFv+ave+LGG++kAtPk+++++m vkgLtl+h+kSHLQk+Rl
  Pp3c4_16540V3.1.p  49 KPRLRWTPELHERFVDAVERLGGADKATPKSVMRVMAVKGLTLYHLKSHLQKFRL 103
                        79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.01146106IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-3247104IPR009057Homeodomain-like
SuperFamilySSF466898.06E-1749104IPR009057Homeodomain-like
TIGRFAMsTIGR015576.7E-2449104IPR006447Myb domain, plants
PfamPF002491.2E-751101IPR001005SANT/Myb domain
PfamPF143793.9E-24146192IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0010628Biological Processpositive regulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MYQVQGKNYT NMELVPANGA QSASSNQDIP SAYGATFSSD GGVSSADPKP RLRWTPELHE  60
RFVDAVERLG GADKATPKSV MRVMAVKGLT LYHLKSHLQK FRLGKQLHRD SSGHEGAKGG  120
SADIQVTISA CSDGPSTPKP QNQESFQISE AIRMQMEVQR RLQEQLEIQR QLQLRIEAQG  180
KYLQSILEKA KEALGSHIGA SPGLETVHAE LTELASKVNS EPMNMCFPPL TLPELPTQSA  240
DARIGNLPRQ ESRVSDSSSQ KSHVTNGAAN PEDSGGASAS CENQASIGIQ KFET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-2149105157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-2149105157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-2149105157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-2149105157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.159350.0gametophore| protonema
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373739.10.0protein PHR1-LIKE 3-like
SwissprotQ8LAJ71e-65PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A2K1KNR00.0A0A2K1KNR0_PHYPA; Uncharacterized protein
STRINGPP1S13_270V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.12e-48G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]