PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_15559V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 741aa    MW: 80496.4 Da    PI: 7.6736
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_15559V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.91.2e-29366425159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dg++WrKYGqK+ kg++ pr+Y+rCt + gCpv+k+v+r++ed++++++tYeg+Hnh 
  Pp3c4_15559V3.1.p 366 MNDGCQWRKYGQKMAKGNPWPRAYFRCTVSpGCPVRKQVQRCEEDTSILVTTYEGTHNHA 425
                        58**************************999****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31351425IPR003657WRKY domain
SuperFamilySSF1182901.03E-26359425IPR003657WRKY domain
PROSITE profilePS5081128.013361427IPR003657WRKY domain
SMARTSM007743.5E-37366426IPR003657WRKY domain
PfamPF031069.3E-26367424IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MWMLESSNGE STNKEVVNRF DNKNMVVEVV KKTSSTSGRF DMLTDIDLSV KLDEDNVDED  60
KKVEKGEHKK NPQIGQDHQM CGTKYDETRS PAPNFRRIRQ QHENGYAFKC KVGGRGSEFR  120
ERAQLLTRGA EPSSVEDESP PSSPAGPTAS VATHLRDELM AARTEITRLS EENDRFRSML  180
TQLSTEYRNL QIHVVASMQR SSDTLNNQVQ SPQKQCISES PIILEASIPS NPDIKKFHGL  240
SSPRSAPQEQ IAKQMIGTRI FYNQSPQIQD ITVSRPGCGR PSPEGSLSPS ESFQGRPAML  300
QPPSPSQKAC QLQQRASVHQ SEWQANKSQK ISHCDVPQGQ SVNQFEGDQV KKARVSVRAR  360
SDAATMNDGC QWRKYGQKMA KGNPWPRAYF RCTVSPGCPV RKQVQRCEED TSILVTTYEG  420
THNHALSLAA AVMASTTSAA ASMLLTGSTT SATPHMATTP QFITISGPQG QNSTAVPAIS  480
ASSPFPTITL DLTNTPASQI SNRSNNSPGT ASTNLHYFQD TTINGVTISQ ATTQQQLMIP  540
QQPTTISCPM FLNETAHKHD GSNLTLRGAF SDPTTHHHRQ MDSSDGTRSD HQHKPAVTQP  600
PESPTTLAES MTAATAAITS DPNFAAALAA AITSILAHQH NNNNNQSLQD LATQVTEIRH  660
REGHQNTSLP PSSFTPVASS GTTEGLQVQP MSHDAELSTI LASAMMSTSK DPPSTGLSKS  720
PRPFVSQGSA VAAAPDRRHQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-21353426173WRKY transcription factor 1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.144510.0gametophore| protonema
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8896240.0DQ889624.1 Physcomitrella patens WRKY transcription factor 5 (WRKY5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373987.10.0probable WRKY transcription factor 31
TrEMBLA0A2K1KNM60.0A0A2K1KNM6_PHYPA; Uncharacterized protein
STRINGPP1S47_251V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.17e-35WRKY DNA-binding protein 31