PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_14760V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 483aa    MW: 53205.2 Da    PI: 5.3496
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_14760V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-19310360255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrd s    + +r++lg+f+tae+Aa a++aa++k++g
  Pp3c4_14760V3.2.p 310 HYRGVRQRP-WGKFAAEIRDSSR---QgTRVWLGTFDTAEQAALAYDAAALKMRG 360
                        69*******.**********422...24*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.68E-21310368No hitNo description
PfamPF008473.3E-15310360IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23310369IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.6E-32310369IPR001471AP2/ERF domain
SMARTSM003802.9E-36310374IPR001471AP2/ERF domain
PROSITE profilePS5103224.144310368IPR001471AP2/ERF domain
PRINTSPR003676.8E-11311322IPR001471AP2/ERF domain
PRINTSPR003676.8E-11334350IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MFTFAAAKRT RGLLEGNNTS PESVVAKALS LQTPQQSDLQ AFSSQFRNCD PLAALATRIL  60
STSDTFPCHE ETTSSSRFYE GRGHMLKRSR SNEFVRFENQ EKLCHRTWLL ADQPPYSLGS  120
TFKETIDHAV TERAAWNTTS SQFDWFRDPS LTTPLVPEHT TCLTKPWPSV RHGQSNVTTD  180
STESYLLQIL ATKQEPGSWP DWRKQTRSGG VPSPPDEPVS THLPLNENNS EDAVFYQMIM  240
DMDEPSPAET APASVLRSPV RTRRVFPEAA VMGCAKHNQQ ENDRSSVDTP STPPQEKKCA  300
QTKVTRSILH YRGVRQRPWG KFAAEIRDSS RQGTRVWLGT FDTAEQAALA YDAAALKMRG  360
RRALLNFPLR ATLPTPTPPP TASASSTPSP SEPDLQPDSS PEPEPSANVS TDEGIETGST  420
ASEVEKATQP AILEVQDLTT EFLEVLLSSS HPDSDLRPTS PLLFDGCTLI SDIACSNFPL  480
QV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-29310370565ATERF1
3gcc_A7e-29310370565ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373067.10.0uncharacterized protein LOC112281109
TrEMBLA0A2K1KNG50.0A0A2K1KNG5_PHYPA; Uncharacterized protein
STRINGPP1S13_457V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.13e-24ethylene responsive element binding factor 2