PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c4_14410V3.2.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

C3H

Protein Properties

Length: 776aa MW: 84356.4 Da PI: 5.5423

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c4_14410V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.4e-07	149	173	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C a+tG C++Gd+C+F+H+ Pp3c4_14410V3.2.p 149 ICGAVAKTGdanACQFGDSCRFNHD 173 799999******************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	9.807	144	175	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.9E-5	149	173	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.803	188	213	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	2.3E-76	418	661	IPR013785	Aldolase-type TIM barrel
CDD	cd02801	2.70E-98	422	658	No hit	No description
SuperFamily	SSF51395	6.28E-66	422	736	No hit	No description
Pfam	PF01207	6.4E-54	425	666	IPR001269	tRNA-dihydrouridine synthase
PROSITE pattern	PS01136	0	506	524	IPR018517	tRNA-dihydrouridine synthase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008033	Biological Process	tRNA processing
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 776 aa Download sequence Send to blast
MEVGNDLSAG VGKSDVETAS QMADEVLKVA VAAELPSSVT AEEGLGGGST DGADGAQALS 60 KENYPSAEEL IAKSRAPVKR EYVVLNIAPR VMAKSIVITK EAVTNSPEEG TANAVEASKP 120 FTAKASVDKK SRRQRKRERK EAITSAENIC GAVAKTGDAN ACQFGDSCRF NHDLAAFMEQ 180 KPKDLEGLCP LLDVTSSCPY GFACRFSGSH PEVKGTEVAE VLKDGNYDGK NPMSSIRELN 240 SLNKSFQKLL WKNAVTFPKA DAQLQALGLL GKARKLVAKP SVVCKGDEAK PVLVYDDTAA 300 KVKFESSNIV EVSPEEAEII AASETTNGSA GLPGDGEVRT DGPDGPLSSD TSLINKEYPP 360 RKKVRTIVIE AADEALQQAS DNVLEATSGR SNSRVDDDDM KYLNDEVKEP LRDKKLVDFR 420 GKLYLAPLTT VGNLPFRRVC KKLGADITCG EMAMCTNLLQ GQASEWALLR RHEEEDIFGV 480 QICGSYADTV ARAAELIERE CTVDFIDLNV GCPIDVVVNK GGGSSLLTKP QRLQEIVRAA 540 SGSINTPLTV KLRMGFFEGR NCAHSLLPDL GSWGATAVTI HGRTRQQRYS KLADWDYINQ 600 CVTNGPSDVQ LIGNGDVFSY TDYNGHLESS GGKLATCMIA RGALIKPWLF TEIKEQRHWD 660 ITAEERLNIL RDYVKFGLIH WGSDSKGVET TRHFLLEWLS YAHRYIPVGL LDVIPQKLNW 720 RPPNYFGRND LETLMASDSA ADWVRLTEMV LGPPPPGFAF APKHKSNAYD KAENG*

Sequence ? help Back to Top

Protein Sequence Length: 776 aa Download sequence Send to blast

MEVGNDLSAG VGKSDVETAS QMADEVLKVA VAAELPSSVT AEEGLGGGST DGADGAQALS  60
KENYPSAEEL IAKSRAPVKR EYVVLNIAPR VMAKSIVITK EAVTNSPEEG TANAVEASKP  120
FTAKASVDKK SRRQRKRERK EAITSAENIC GAVAKTGDAN ACQFGDSCRF NHDLAAFMEQ  180
KPKDLEGLCP LLDVTSSCPY GFACRFSGSH PEVKGTEVAE VLKDGNYDGK NPMSSIRELN  240
SLNKSFQKLL WKNAVTFPKA DAQLQALGLL GKARKLVAKP SVVCKGDEAK PVLVYDDTAA  300
KVKFESSNIV EVSPEEAEII AASETTNGSA GLPGDGEVRT DGPDGPLSSD TSLINKEYPP  360
RKKVRTIVIE AADEALQQAS DNVLEATSGR SNSRVDDDDM KYLNDEVKEP LRDKKLVDFR  420
GKLYLAPLTT VGNLPFRRVC KKLGADITCG EMAMCTNLLQ GQASEWALLR RHEEEDIFGV  480
QICGSYADTV ARAAELIERE CTVDFIDLNV GCPIDVVVNK GGGSSLLTKP QRLQEIVRAA  540
SGSINTPLTV KLRMGFFEGR NCAHSLLPDL GSWGATAVTI HGRTRQQRYS KLADWDYINQ  600
CVTNGPSDVQ LIGNGDVFSY TDYNGHLESS GGKLATCMIA RGALIKPWLF TEIKEQRHWD  660
ITAEERLNIL RDYVKFGLIH WGSDSKGVET TRHFLLEWLS YAHRYIPVGL LDVIPQKLNW  720
RPPNYFGRND LETLMASDSA ADWVRLTEMV LGPPPPGFAF APKHKSNAYD KAENG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ei9_A	1e-25	419	655	27	258	tRNA-dihydrouridine synthase B
6ei9_B	1e-25	419	655	27	258	tRNA-dihydrouridine synthase B
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	139	RRQRKRERK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.4017	0.0	protonema

Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024374675.1	0.0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
Swissprot	Q9T0J6	0.0	DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A0A2K1KNF4	0.0	A0A2K1KNF4_PHYPA; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	PP1S219_23V6.1	0.0	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c4_14410V3.2.p

Publications ? help Back to Top
Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics, 2004. 4(2): p. 397-406 [PMID:14760709]