PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_13250V3.1.p
Common NamePHYPADRAFT_97961
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 507aa    MW: 56467.8 Da    PI: 7.3023
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_13250V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-05210234123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        ++C+   C+k+F+++ ++k H +tH
  Pp3c4_13250V3.1.p 210 FRCGqeGCNKTFKNPQTMKMHHKTH 234
                        89**********************9 PP
2zf-C2H215.16.9e-05268290223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +Cp+C k+F   ++L+rH  + H
  Pp3c4_13250V3.1.p 268 RCPKCRKTFVGLYELRRHYGRkH 290
                        7*****************86666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.61E-6206235No hitNo description
Gene3DG3DSA:3.30.160.601.2E-7208234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.201210239IPR007087Zinc finger, C2H2
SMARTSM003550.003210234IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280212234IPR007087Zinc finger, C2H2
SuperFamilySSF576671.44E-7267317No hitNo description
PROSITE profilePS501579.452267296IPR007087Zinc finger, C2H2
SMARTSM003550.19267290IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.6E-4268297IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280269290IPR007087Zinc finger, C2H2
SMARTSM00355130297317IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.5E-4298314IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355180323344IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MAALYFYNNV IEPESGSLHR NIDSSRNVAV YSSSGDNSSM FESNWSDSYL SSCSSRESAA  60
TLLALPDEEP HLKFPIEVDE VFLDDASEFL QQGSCNGMVM HPNFVNALKN MVAPDFPEAG  120
RCFELNQYAQ QQEMLFLEQE LFAIPAQLSL ICDNGSRTSL ESGTVPVESI EKYKPPPLNM  180
KRLEKLEDPS DNNIEAAEVS VDLINNRRPF RCGQEGCNKT FKNPQTMKMH HKTHYTNSTA  240
IARGGTEMLP TLTSGSLKAG QNKKIPSRCP KCRKTFVGLY ELRRHYGRKH SEGEKPFGCR  300
KCGKRFYVEV DVRDHEKLCG EPLECKCGLR FAFKCNLVAH KKAHPACQGC ATVNSIKSPT  360
ISEEYLSHSR VSSKLSTLPW QGIKRPRLEE TSRNSPFTTS CHPSTFAPPA LDFKCPPELD  420
NMSTKAVSSG FLGLQFSTDG SSFWASNMNY PTAHVANPPV SVPSPMNSSV LGDMEQPQSQ  480
FFNCRPQTRG LGHEMKVSLH EDSSWR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373214.10.0zinc finger protein 467-like
TrEMBLA0A2K1KN950.0A0A2K1KN95_PHYPA; Uncharacterized protein
STRINGPP1S339_18V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1095648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.12e-14C2H2 family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]