PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c4_12970V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ARF | ||||||||
Protein Properties | Length: 807aa MW: 86838 Da PI: 7.41 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.1 | 7.1e-23 | 138 | 239 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f k+lt+sd+++ g +++p+ +ae++ + ++ + t+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD +vF Pp3c4_12970V3.3.p 138 FAKTLTQSDANNGGGFSVPRYCAETIfppldysSDPPVQ--TVLAKDVHGDVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDAIVFL-- 225 89****************************995444444..8999*********************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++ ++el+v+v+r+ Pp3c4_12970V3.3.p 226 RSASGELCVGVRRS 239 4479999****985 PP | |||||||
2 | Auxin_resp | 102.2 | 6.4e-34 | 320 | 402 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a a +++FevvY+Prast+eF+vk+ v++al++ + +GmRfkmafetedss++++ +Gt+++v+ +dp+ WpnS+Wr+L+ Pp3c4_12970V3.3.p 320 AALAVAGKPFEVVYYPRASTAEFCVKAGLVKQALDHTWYAGMRFKMAFETEDSSRISWfMGTIAAVKPADPLLWPNSPWRVLQ 402 66778899*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-36 | 129 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.54E-30 | 134 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.66E-21 | 137 | 238 | No hit | No description |
SMART | SM01019 | 1.6E-20 | 138 | 240 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.59 | 138 | 240 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.3E-21 | 138 | 239 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.4E-30 | 319 | 402 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 12.085 | 729 | 806 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 807 aa Download sequence Send to blast |
MLEPGLRLSM GIKTEKLDDS GGRERSMASG VGESVDRLDA QLWHACAGGM VQLPQVGAKV 60 IYFPQGHGEQ AATTPDFSAS MGPSGTIPCR VVSVNFLADT ETDEVFARMR LQPEGLHGLN 120 DMTEEAPSSP PPEKPASFAK TLTQSDANNG GGFSVPRYCA ETIFPPLDYS SDPPVQTVLA 180 KDVHGDVWKF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD AIVFLRSASG ELCVGVRRSM 240 RGASGGDSST WHSSANATRA SRWEVKGTES FSDFFAAVGD NGHGGSSNGV SRSGSQGAST 300 TSSFARNRAR VTAKSVLDAA ALAVAGKPFE VVYYPRASTA EFCVKAGLVK QALDHTWYAG 360 MRFKMAFETE DSSRISWFMG TIAAVKPADP LLWPNSPWRV LQVTWDEPDL LQGVSRVSPW 420 QVELVATLPM QLPPFSYPKK KLRAVQPQEL QLQAPGLLNL PLAGSSSFAG QLPTPWGGPA 480 LLENASAGMQ GARHDRFNGP PSMDFRYSNY KRAREHPSEN QYAEQGQTSP AGSARVVLSD 540 PLCGDSHHQF SFLSSGQAHN GGQQQQQQQQ SSQMSGSGLT MGLMPGGSPT RDDGGSNSKS 600 KLKSSPAPTT FLLFGQSIDP SSNSKAAQEQ CVASASSSVE GSSLFQEGLR VSPTSYSSSD 660 NTLEHKDRMR RFNADLNGAS GGTGDGAMSR YRQNEGGPWP ELSIGTEVGS LKWFKEQRLE 720 KEKGSNEALQ HCKVFREGDE VGRTLDLANF KSYEEVYDRL AGMFSVPAAS FKNRVVYQDG 780 EGCTLPVGAE PYGNFVAAVR RLTILP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 9e-75 | 36 | 423 | 17 | 353 | Auxin response factor 1 |
4ldy_B | 9e-75 | 36 | 423 | 17 | 353 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.2724 | 0.0 | protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372940.1 | 0.0 | auxin response factor 10-like isoform X1 | ||||
Refseq | XP_024372941.1 | 0.0 | auxin response factor 10-like isoform X1 | ||||
TrEMBL | A0A2K1KN89 | 0.0 | A0A2K1KN89_PHYPA; Auxin response factor | ||||
STRING | PP1S339_47V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP526 | 15 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 1e-156 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c4_12970V3.3.p |