PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_10850V3.17.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family B3
Protein Properties Length: 650aa    MW: 71693.6 Da    PI: 7.4183
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_10850V3.17.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.25.9e-13178277198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+kv +  d  ++g +vlpk+ +eeh   ++k++++ +tl d +g++W+++++++ ++++  y+++     +v++ +L+ gD+v F++ + 
  Pp3c4_10850V3.17.p 178 FDKVASVTDCRSTGHFVLPKRKVEEHfpPINKPGGIWMTLVDATGKEWSFEFCFWHSKESriYYFK-KFYPYVQSTDLRGGDTVFFSRLE- 266
                         667777778889999*************99999********************9877777768887.7999****************665. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          +++l+++ ++
  Pp3c4_10850V3.17.p 267 PQGTLFIGYRK 277
                         88888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-19174282IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-11176277No hitNo description
SuperFamilySSF1019361.44E-17176280IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-9178278IPR003340B3 DNA binding domain
PROSITE profilePS508639.319178279IPR003340B3 DNA binding domain
PfamPF023622.5E-9180277IPR003340B3 DNA binding domain
PROSITE profilePS5105011.764466516IPR011124Zinc finger, CW-type
PfamPF074966.5E-8471513IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MLGGDFPTLS QSQVRHAQFS NHIGSTCGEE SMERRGTFHS FFGKSTPTQE GTTKKSSSAL  60
ASTLSTCQIP VLGHHVCDFN SVSKSPGGTS ILVGCVLGKA IVKPKQQIRG SVKRNPGEDR  120
KELLATSPLN NGPTLNGKGR TGILTFPRSI SVNGPRIGNL NSPPPSQKFL GTTMTFLFDK  180
VASVTDCRST GHFVLPKRKV EEHFPPINKP GGIWMTLVDA TGKEWSFEFC FWHSKESRIY  240
YFKKFYPYVQ STDLRGGDTV FFSRLEPQGT LFIGYRKQKP PPPKQMKALN CGASKDQFKE  300
REHSNGGLTY LANDWSPSLE EVATRQKKPT KLSADDANVD YALDRGIIQR KKKRKKEFPP  360
LSLAQRTKVI DHLAVGEALI DKKSTSGRSS TPDTFQHDDR IAGVLGSKGK RLRVNADEYA  420
EWKEMQDLLR PAPGALPTVL TIEGHDFEEY EAPPVLITRT YHSPEAHGEN QWVKCNDCGS  480
WRRLSADAFV PAGWICSDSD LDQGRAYCNA PQELSDHEIH QLLGLGLDAE GRTETQEDLN  540
EDGDWTTPEH LYSAQADVCA YKQPTLWSAA MALVDGSLHR GTESYSELKS CESDTSVPEF  600
TDHGPDPAGA AKGYEIPRAD CYDFLGPVGK VLTPRSEIQP VTQHPLTTM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C5e-2317027715122B3 domain-containing transcription repressor VAL1
5yzz_C5e-2317027715122B3 domain-containing transcription repressor VAL1
5z00_C5e-2317027715122B3 domain-containing transcription repressor VAL1
5z00_G5e-2317027715122B3 domain-containing transcription repressor VAL1
5z00_K5e-2317027715122B3 domain-containing transcription repressor VAL1
5z00_M5e-2317027715122B3 domain-containing transcription repressor VAL1
6j9a_A5e-2317027716123B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1348355QRKKKRKK
2349355RKKKRKK
3349356RKKKRKKE
4351355KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372601.10.0B3 domain-containing protein Os07g0563300-like isoform X3
TrEMBLA0A2K1KMY40.0A0A2K1KMY4_PHYPA; Uncharacterized protein
STRINGPP1S227_33V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.12e-53HSI2-like 1