PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_9430V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 328aa MW: 35294.3 Da PI: 9.6496 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.3 | 2.1e-14 | 155 | 204 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++G r+++ +g+++AeIrd + + r +lg+f+taeeAa a++ a+ +l+g Pp3c3_9430V3.1.p 155 FRGGRQRP-WGKFAAEIRDSTR---HgSRLWLGTFDTAEEAALACDDAAIQLRG 204 77889999.**********422...25*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.49E-27 | 153 | 213 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.0E-27 | 154 | 213 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-19 | 154 | 213 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.5E-32 | 154 | 218 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.85 | 154 | 212 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-9 | 155 | 204 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 155 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 178 | 194 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MLLDSNSLIS MYQSHDSRSA ITRESKCVHF INPPEASKSA HPPLDNDRGG GALLRLGTDK 60 NGVDDIFLSS LVKNGWGIDF SSCRETEATP TCSNVLAGKA EKLSVTISNP VSTSNPTQRS 120 DRVNHVTADV SEASQDISSK SSSRRGGARQ SHQHFRGGRQ RPWGKFAAEI RDSTRHGSRL 180 WLGTFDTAEE AALACDDAAI QLRGSRALLN FPVRAASGLN VRLLTTSRPK ASKPPPQSAS 240 SVETQLKFKS NNSGRLCGKK RPLDTTEMKA EEDFGSAGNQ ACASLPTKLT DSSYRIFSPP 300 QSRPHQTRIC QDMPLSTCSA GLPPNSQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-27 | 153 | 218 | 4 | 69 | ATERF1 |
3gcc_A | 9e-27 | 153 | 218 | 4 | 69 | ATERF1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024370218.1 | 0.0 | ethylene-responsive transcription factor ERF025-like | ||||
TrEMBL | A0A2K1KTR8 | 0.0 | A0A2K1KTR8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S140_167V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 4e-22 | ethylene responsive element binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_9430V3.1.p |