PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_9350V3.4.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

LFY

Protein Properties

Length: 273aa MW: 30554.2 Da PI: 8.9064

Description

LFY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_9350V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FLO_LFY	41.1	3e-13	146	220	38	115
FLO_LFY 38 eaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavra 115 ++aa + +++ +le +f ++G+r t+ ki+e+Gft +t++ d el l++s+ + ++ l +Ge +Gik a + Pp3c3_9350V3.4.p 146 VKSAAPSLTEAADLESFFDGFGIRPETIGKIKEMGFTGKTFMSNVD-ELLTLLDSIKQ--HCHLTLGEEWGIKGAAKK 220 233344455577***************************98665.56678888887..577899*****99764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01698	4.5E-8	150	219	IPR002910	Floricaula/leafy protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MVKVKGVEWN HVLVVKEPER HGMATLVRCA HCGKEFQGNA MRIRAHLLGN KRSAGVSGCP 60 SCPEDAREEL RIIDIAKSQV KRKRQDRTPR VPRATSSSDH SLDSAMQQMD FMTALQKGEK 120 SAVEQALRSM VFQGGLPVNF VNFSPVKSAA PSLTEAADLE SFFDGFGIRP ETIGKIKEMG 180 FTGKTFMSNV DELLTLLDSI KQHCHLTLGE EWGIKGAAKK WQKDHSMVFN QPELEKWPET 240 DNETANGCKE LSCLRKRHYP VLRVTFHVLF VF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.11244	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024369664.1	0.0	uncharacterized protein LOC112279448
TrEMBL	A0A2K1KTT2	0.0	A0A2K1KTT2_PHYPA; Uncharacterized protein
STRING	PP1S140_156V6.1	1e-158	(Physcomitrella patens)

Link Out ? help Back to Top
Phytozome	Pp3c3_9350V3.4.p