PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_8880V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 434aa    MW: 47779.9 Da    PI: 9.3612
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_8880V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1691.6e-52171451128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeelv +yL++k+e++ + +  vi+e+d+yk++PwdLp k+  +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++
  Pp3c3_8880V3.1.p  17 LPPGFRFHPTDEELVLHYLCRKAESHVFAI-PVIAEIDLYKFDPWDLPGKAIFGEREWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPIH 108
                       79*************************999.89***************7766799************************************** PP

               NAM  94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++  + +++g+kk Lvfykgrapkg+kt+W+mheyrl
  Pp3c3_8880V3.1.p 109 TSvgGIRKIGVKKALVFYKGRAPKGVKTNWIMHEYRL 145
                       99877788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-6313174IPR003441NAC domain
PROSITE profilePS5100560.98917174IPR003441NAC domain
PfamPF023652.1E-2718145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MVILASPTGG PVTQLQLPPG FRFHPTDEEL VLHYLCRKAE SHVFAIPVIA EIDLYKFDPW  60
DLPGKAIFGE REWYFFSPRD RKYPNGARPN RAAASGYWKA TGTDKPIHTS VGGIRKIGVK  120
KALVFYKGRA PKGVKTNWIM HEYRLAEGVC ASVHAHRKGS LRLDDWVLCR IYKKSTNAQR  180
TGKERDSSSC VEEVLASLPE IGEPKLALPR LGSFTGFSEP DDNHFVEGLL TGENKSVEVE  240
SSPEFKRNIL SLQRGLQPHQ GTVGSHTLLG FNSKLPFGSK MARSMDGLFD NQQFDKFNRQ  300
VLELGPTSSQ RPTTLSLRQP ASDSAMRQVE NVLMPLRPGV GTMPENRAIS DEEVQSTFRS  360
TSIGQFSGAS NNEGLESIFS FNYEQPRATI NALLPGSTTG PNTELGFSGG SLSASPPQYT  420
RARAPNYSYN PSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-831118014174NAC domain-containing protein 19
3swm_B2e-831118014174NAC domain-containing protein 19
3swm_C2e-831118014174NAC domain-containing protein 19
3swm_D2e-831118014174NAC domain-containing protein 19
3swp_A2e-831118014174NAC domain-containing protein 19
3swp_B2e-831118014174NAC domain-containing protein 19
3swp_C2e-831118014174NAC domain-containing protein 19
3swp_D2e-831118014174NAC domain-containing protein 19
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.2710.0protonema
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00121DAPTransfer from AT1G01720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369623.10.0NAC domain-containing protein 2-like
TrEMBLA0A2K1KTP60.0A0A2K1KTP6_PHYPA; Uncharacterized protein
STRINGPP1S140_93V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.27e-89NAC family protein