PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_8830V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | WRKY | ||||||||
Protein Properties | Length: 580aa MW: 62980.1 Da PI: 5.1488 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.5 | 4.1e-31 | 352 | 409 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK vk+s+fprsYYrCt ++Cpv+k+ver+a d +v++tYeg+H h Pp3c3_8830V3.1.p 352 MEDGYKWRKYGQKAVKDSPFPRSYYRCTNQTCPVRKRVERKAGDAGLVVTTYEGTHSH 409 58*******************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-31 | 339 | 411 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-27 | 344 | 410 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.481 | 347 | 412 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.6E-36 | 352 | 411 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-24 | 353 | 409 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 580 aa Download sequence Send to blast |
MSEMTREDDG EQPHVETNSS PEIDYLMRSL GEDVKLSNSP RRPGLKKRAA KPAKSPSSLT 60 VSPPPRDNST FFQPQQQQQQ SHPSPPPQFD VAIFMPSPTA PWIKFPPLLL SPQPVDTHGL 120 NLPNTTIGNP TPHQSVQLTA SPFDHLSTSN SDLLEPSPEY PWFPASQDAQ PATPNFTPLV 180 QLLNLSPVAT KVGERTLPTL STYSDGMVSM PASSRISSEA VGNQDGFTGQ GRLPSPTPSL 240 VGDVSPLNSP LTSTPNSPFD SPFDSPFGSE GGYFSDGGTL IDIVGVLESN TSSAKRKTPD 300 RALDESEDIQ PLDEPDPKKQ TTKKEKKGAV KLNKRVRVPR YAIHTRSEID VMEDGYKWRK 360 YGQKAVKDSP FPRSYYRCTN QTCPVRKRVE RKAGDAGLVV TTYEGTHSHL SPVTEAATVA 420 AASAKGSDGF NATLSEDSRP AAATCFPFQP VQERNMFDLT MQIQAGEIDL EAANRDLASV 480 AKTSNEESQP PPVGLHTHNS LYSDSHLPND SHILNQAQLD PDRLLELQGE IPASVVIPDP 540 QLGRSQLEMF DLSGQLSNTE SYVSLLGDIL QNSGPLHHL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-24 | 342 | 409 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-24 | 342 | 409 | 7 | 74 | Probable WRKY transcription factor 4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ889622 | 0.0 | DQ889622.1 Physcomitrella patens WRKY transcription factor 3 (WRKY3) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024371065.1 | 0.0 | WRKY transcription factor WRKY24-like | ||||
Refseq | XP_024371066.1 | 0.0 | WRKY transcription factor WRKY24-like | ||||
Refseq | XP_024371067.1 | 0.0 | WRKY transcription factor WRKY24-like | ||||
Refseq | XP_024371068.1 | 0.0 | WRKY transcription factor WRKY24-like | ||||
Refseq | XP_024371069.1 | 0.0 | WRKY transcription factor WRKY24-like | ||||
Refseq | XP_024371070.1 | 0.0 | WRKY transcription factor WRKY24-like | ||||
Refseq | XP_024371072.1 | 0.0 | WRKY transcription factor WRKY24-like | ||||
Refseq | XP_024371073.1 | 0.0 | WRKY transcription factor WRKY24-like | ||||
TrEMBL | A0A2K1KTQ7 | 0.0 | A0A2K1KTQ7_PHYPA; Uncharacterized protein | ||||
STRING | PP1S140_87V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 4e-34 | WRKY DNA-binding protein 57 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_8830V3.1.p |