PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_810V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 440aa    MW: 47876.3 Da    PI: 8.7861
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_810V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13238288155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h   Er+RR+ +N  f++Lr+llP++    ++K +K+++  + ++YI+sLq
  Pp3c3_810V3.1.p 238 QRENHIWSERQRRKGMNYLFSTLRSLLPQP----NPKTDKSTVIGEIIKYIQSLQ 288
                      7999*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.08E-14237292No hitNo description
PROSITE profilePS5088815.529237287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-15237302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-16238305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-11238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9243293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MPSHSQIGQV GLQLQHPAQL LSYPMPPCTP QAHCRSDSLL PYSLESWFPA SSTTFEATTR  60
SCGSPPGWSN FQQPVETPEG SVGDAIRIST GSAISQPADF QCDTWWSPIT VQAAMPNDNL  120
ISQRGSEISC DLEAGASYPM IFTTDCELDS RQRAIGNIGG CDQNEPRKYP TSALAVVNVA  180
QIPASVSRSK GASRKEILQL AKEKLARTPT SPSEVRLGKE KQLGVQKSKG SGKRPLSQRE  240
NHIWSERQRR KGMNYLFSTL RSLLPQPNPK TDKSTVIGEI IKYIQSLQVK LEMLTKKRQQ  300
VMTAVLPRPG SSASHCTGLT LLDHSNFDSS SMTAITALPP PGRESCLQSY LGTNVGLHVC  360
GLNVFITTSS PRGRRGLLQQ LLLTIQRYNL EVINATISTS SASIFHCLHC QASQNAEVLN  420
NDLHSALQTA ITNFGLTQF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369691.10.0transcription factor bHLH95-like
TrEMBLA0A2K1KSS30.0A0A2K1KSS3_PHYPA; Uncharacterized protein
STRINGPP1S1_263V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12261548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-14bHLH family protein