PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_7020V3.3.p
Common NamePHYPADRAFT_171511
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 486aa    MW: 54124.7 Da    PI: 6.6078
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_7020V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-12224271453
               AP2   4 kGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 
                       kGVr+++ r +WvAe   ++  g k+ ++slg ++  +eAa+aa+a + ++
  Pp3c3_7020V3.3.p 224 KGVRYRSDRRKWVAE---YNPPGkKNNKISLGEYDGLNEAARAADAGMFCY 271
                       9**************...65556688********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.76222281IPR001471AP2/ERF domain
SMARTSM003800.0081222287IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-10222283IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-11224283IPR001471AP2/ERF domain
PfamPF008471.4E-8224270IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MGADKGAGAC QVVTRDLRRP SPICTVSRYS PRRSINAYYP DFAYRVDVKR KCLQVLSVVG  60
PSKFVQGAEV EGSSCFNRLR AEGEAKCIEE YSTRLGYRYS NTQPSTFYFP AIFECLCSED  120
AKVGEDGKLD LKPEVKWVNP LPFDSGAEDL VMSLARHASE WIAYFQRNIS KLHKGSSDHT  180
KLSLVLQLDV INCESWTTRV PKSPHEARFV CDFINTQGAA KKQKGVRYRS DRRKWVAEYN  240
PPGKKNNKIS LGEYDGLNEA ARAADAGMFC YGSKQASYNF DDSPRFLQQH PQPVTSDKEA  300
VRKWARNFAK MMTNTSPSPS MSGDGGQSSS CLSFGNDISI PTSFSNSRML QHLPSSNSTS  360
NLFQVFPRVG VTDYELLMDD CDSGSALSFP DVAQHNISRD TSNPLDQECT QMIVSQDPAQ  420
IVYPDEALFQ NNFGVQDVDC WVPPLLQTTL IRTSSDGNWA SDDLFPSFPP PSNPEVERCS  480
IQLIR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.119770.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370073.10.0uncharacterized protein LOC112279664
RefseqXP_024370074.10.0uncharacterized protein LOC112279664
TrEMBLA9TRA80.0A9TRA8_PHYPA; Predicted protein
STRINGPP1S296_7V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.13e-12ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]