PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c3_7020V3.1.p | ||||||||
Common Name | PHYPADRAFT_171511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 486aa MW: 54124.7 Da PI: 6.6078 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.6 | 1.3e-12 | 224 | 271 | 4 | 53 |
AP2 4 kGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 kGVr+++ r +WvAe ++ g k+ ++slg ++ +eAa+aa+a + ++ Pp3c3_7020V3.1.p 224 KGVRYRSDRRKWVAE---YNPPGkKNNKISLGEYDGLNEAARAADAGMFCY 271 9**************...65556688********************99887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.76 | 222 | 281 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0081 | 222 | 287 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-10 | 222 | 283 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-11 | 224 | 283 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-8 | 224 | 270 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 486 aa Download sequence Send to blast |
MGADKGAGAC QVVTRDLRRP SPICTVSRYS PRRSINAYYP DFAYRVDVKR KCLQVLSVVG 60 PSKFVQGAEV EGSSCFNRLR AEGEAKCIEE YSTRLGYRYS NTQPSTFYFP AIFECLCSED 120 AKVGEDGKLD LKPEVKWVNP LPFDSGAEDL VMSLARHASE WIAYFQRNIS KLHKGSSDHT 180 KLSLVLQLDV INCESWTTRV PKSPHEARFV CDFINTQGAA KKQKGVRYRS DRRKWVAEYN 240 PPGKKNNKIS LGEYDGLNEA ARAADAGMFC YGSKQASYNF DDSPRFLQQH PQPVTSDKEA 300 VRKWARNFAK MMTNTSPSPS MSGDGGQSSS CLSFGNDISI PTSFSNSRML QHLPSSNSTS 360 NLFQVFPRVG VTDYELLMDD CDSGSALSFP DVAQHNISRD TSNPLDQECT QMIVSQDPAQ 420 IVYPDEALFQ NNFGVQDVDC WVPPLLQTTL IRTSSDGNWA SDDLFPSFPP PSNPEVERCS 480 IQLIR* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.11977 | 0.0 | gametophore| protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024370073.1 | 0.0 | uncharacterized protein LOC112279664 | ||||
Refseq | XP_024370074.1 | 0.0 | uncharacterized protein LOC112279664 | ||||
TrEMBL | A9TRA8 | 0.0 | A9TRA8_PHYPA; Predicted protein | ||||
STRING | PP1S296_7V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31060.1 | 3e-12 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c3_7020V3.1.p |
Entrez Gene | 5944360 |
Publications ? help Back to Top | |||
---|---|---|---|
|