PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_6830V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 24720.2 Da PI: 6.3565 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.9e-20 | 52 | 102 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+Wv+eIr+p++ r r++lg+f tae+Aa+a++aa +l+g Pp3c3_6830V3.1.p 52 PKYRGVRQRQ-WGKWVSEIREPKK---RSRIWLGSFPTAEMAARAYDAAVVCLRG 102 79*****999.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.0E-12 | 52 | 102 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.16E-36 | 52 | 112 | No hit | No description |
SMART | SM00380 | 9.9E-41 | 53 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-33 | 53 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-22 | 53 | 112 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.933 | 53 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 54 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MTIRMLVNAM VARSGSLRTA PDIGVESTQH CLGVVKEKNR FALKEGVNVA VPKYRGVRQR 60 QWGKWVSEIR EPKKRSRIWL GSFPTAEMAA RAYDAAVVCL RGPTASLNFP DSPPHGLPAC 120 QSPHDVQIAA AAAAAELSSP LSLPNPPVAL PLDVQLHIME SETKPSPELQ RIETKKADQL 180 GSDEIVSRSS ASDWFTPFED PWCSNHALED MGTSFTDFPY LEDII* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 46 | 110 | 7 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.15529 | 0.0 | gametophore |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024370011.1 | 1e-167 | ethylene-responsive transcription factor ERF038-like | ||||
TrEMBL | A0A2K1KTK0 | 1e-166 | A0A2K1KTK0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S296_32V6.1 | 1e-167 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 9e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_6830V3.1.p |