PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_6420V3.1.p
Common NamePHYPADRAFT_171520
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 406aa    MW: 45985.1 Da    PI: 4.6143
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_6420V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.64e-1554104353
               AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr..krfslgkfgtaeeAakaaiaarkkl 53 
                       + GVr++   ++WvAeIr+  ++   +  k+++lg+f+++e+Aa+a +aark l
  Pp3c3_6420V3.1.p  54 FFGVRFRNDLQKWVAEIRVaEWK---SvdKKVWLGTFDSEEGAARAVDAARKLL 104
                       56*****************6433...345**********************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.50E-115299No hitNo description
SuperFamilySSF541711.5E-952104IPR016177DNA-binding domain
PROSITE profilePS5103214.10453115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-1353109IPR001471AP2/ERF domain
SMARTSM003802.7E-553119IPR001471AP2/ERF domain
PfamPF008473.9E-954102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MKVDISKGYP SAIKNNYDLI SFPTDAHRAM VENGDLMYSG KAPKKTRAKE SSRFFGVRFR  60
NDLQKWVAEI RVAEWKSVDK KVWLGTFDSE EGAARAVDAA RKLLKCKKKR AFNIHSPELE  120
AFSEKEMIPP HLNLKDLRDE SMFKNVTVFI KRKAQEYAAS FNPYILTESS EPLSTFTHVD  180
LDSRPYDISS QEDMTVATPS LKVENLNDFE DAHYSEVAGP YSDMCSTSAS SFSPPSRVSD  240
GCWIRSGTSP EDNTNWFQVD ASSFEHCQDG GGYGCFDWQE LSSKSSSPHS DDALEHEATT  300
SHCLTRPEEQ ELACSESSRM EAIPLDMWDI FLETFYSESQ ANLDQTAMDI STGHEEQLNF  360
DIYTPNRALL PQKQLPEENM DWHYNSLSSL NPCLMNPFEF TQAVY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370039.10.0uncharacterized protein LOC112279638 isoform X1
RefseqXP_024370040.10.0uncharacterized protein LOC112279638 isoform X2
TrEMBLA0A2K1KTL10.0A0A2K1KTL1_PHYPA; Uncharacterized protein
STRINGPP1S296_69V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.14e-06ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]