PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_37710V3.1.p

Common Name

PHYPADRAFT_132443

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HD-ZIP

Protein Properties

Length: 333aa MW: 37501.2 Da PI: 5.0106

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_37710V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2.1e-18	96	149	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t eq++ Le+ Fe ++++ e++ +LAk+lgL rqV +WFqNrRa++k Pp3c3_37710V3.1.p 96 KKRRLTIEQVRSLEKNFEAENKLEPERKMRLAKELGLRPRQVAIWFQNRRARWK 149 45689************************************************9 PP
2	HD-ZIP_I/II	121.3	4.9e-39	95	187	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv++LE++Fe+e+kLeperK++la+eLgl+prqva+WFqnrRAR+ktkqlE+dye+L + y++lk++ e++ +e+++L++el+ Pp3c3_37710V3.1.p 95 EKKRRLTIEQVRSLEKNFEAENKLEPERKMRLAKELGLRPRQVAIWFQNRRARWKTKQLERDYETLESDYKRLKADYEQVLSEKNHLKAELQ 186 69***************************************************************************************998 PP HD-ZIP_I/II 93 e 93 + Pp3c3_37710V3.1.p 187 R 187 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.4E-20	72	152	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.15E-19	84	153	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.75	91	151	IPR001356	Homeobox domain
SMART	SM00389	2.4E-15	94	155	IPR001356	Homeobox domain
Pfam	PF00046	8.4E-16	96	149	IPR001356	Homeobox domain
CDD	cd00086	1.76E-15	96	152	No hit	No description
PRINTS	PR00031	1.6E-5	122	131	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	126	149	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.6E-5	131	147	IPR000047	Helix-turn-helix motif
Pfam	PF02183	4.3E-11	151	187	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MAITSMGHYS GQNEVFTGNG NTSDSFAAMI GPCSPHVDLQ ALRRSGGGLG DDGQSQGGGQ 60 KRRYFASYDA PKMEDGPEDA DEGTEDGTGN GSQLEKKRRL TIEQVRSLEK NFEAENKLEP 120 ERKMRLAKEL GLRPRQVAIW FQNRRARWKT KQLERDYETL ESDYKRLKAD YEQVLSEKNH 180 LKAELQRKSR DVPASKQDDN NLGLESIQTP ERDRHVSDSD ARQLNSRSSP TVDISRVKDE 240 ISGSTDGNSS DIVDADSPRT TNSSRKSVIQ SSDFPPESLM GHPQLLDTYP EEKIRLDTAV 300 KLEDNFHEDQ SCNYLLLHLD QQSGVLPWWD WP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	151	RRARWKTKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.159	0.0	gametophore

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB028076	0.0	AB028076.1 Physcomitrella patens mRNA for homeobox protein PpHB5, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024369881.1	0.0	homeobox-leucine zipper protein HOX20-like isoform X2
Refseq	XP_024369882.1	0.0	homeobox-leucine zipper protein HOX20-like isoform X2
TrEMBL	A9SN13	0.0	A9SN13_PHYPA; Predicted protein
STRING	PP1S96_191V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	2e-38	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Pp3c3_37710V3.1.p
Entrez Gene	5930898

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]