PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_35020V3.1.p
Common NamePHYPADRAFT_230817
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family CO-like
Protein Properties Length: 495aa    MW: 54569.4 Da    PI: 5.4139
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_35020V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.76.6e-102466440
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       r C+ +++++++++Ce ++ +lC+ C ++ H+       H++v
  Pp3c3_35020V3.1.p 24 RACDVCGSQRARWYCEADNAHLCNRCDQSVHSAnalalrHERV 66
                       68*****************************668888888876 PP
2CCT68.22.2e-23447490144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        R a+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Pp3c3_35020V3.1.p 447 RGARIMRYREKRRTRLFSKKIRYEVRKLNAERRPRMKGRFVKRT 490
                        789***************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.2912168IPR000315B-box-type zinc finger
SMARTSM003362.7E-102168IPR000315B-box-type zinc finger
CDDcd000211.08E-102468No hitNo description
PfamPF006439.3E-82466IPR000315B-box-type zinc finger
PfamPF062032.0E-17447489IPR010402CCT domain
PROSITE profilePS5101715.983447489IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MAGVKGAAHA NVAMAMAIAG RASRACDVCG SQRARWYCEA DNAHLCNRCD QSVHSANALA  60
LRHERVRLNP QDCTTQPLKK VVVDTLDASN KSRKSHHPRP TDKHSLPSRK RSRLSRRPNP  120
HLRPPTSTSK SQHRRGKVKS EGRGAEDSHE VPNFITVNIQ ESPVSFAHDS ATAMSMAEFC  180
KERATAAASV YVDVEDAYEE ISSGDTGPDF LVPNGYMDDF ESAIGAPIGC HEDARSPFDS  240
GNGAMDMNKS HDIMFMRNDL ELCGSDEQYE DYPLDFSDIV GLRDGDAFEG DCGDTSELVD  300
EVGEENKDED GDGDGDGDGD GFECSLDARA QSNVCEDQGL VSYTQDFPYK VKQEYTVPDS  360
YDLIKKEVAA VLRCSLQGEE VKPAPSLLRL NYEDIMSAWS DRSLWTDGKR PQTVPDDSNS  420
ESTVDLGMVP DFGNGCQTVP GGSDGGRGAR IMRYREKRRT RLFSKKIRYE VRKLNAERRP  480
RMKGRFVKRT PGCS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1457473RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371732.10.0uncharacterized protein LOC112280450
TrEMBLA0A2K1KX790.0A0A2K1KX79_PHYPA; Uncharacterized protein
STRINGPP1S112_154V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.14e-27B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]