PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_34900V3.3.p
Common NamePHYPADRAFT_233986
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family G2-like
Protein Properties Length: 433aa    MW: 46300.4 Da    PI: 4.9119
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_34900V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.1e-32136190155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+rlrWtpeLHe+F+ av++LGG+++AtPk+++ lm+v+g+t++hvkSHLQkYRl
  Pp3c3_34900V3.3.p 136 KTRLRWTPELHEKFITAVAHLGGADRATPKAVMGLMGVQGITIYHVKSHLQKYRL 190
                        68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.704133193IPR017930Myb domain
SuperFamilySSF466891.79E-16134190IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-30135191IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-23136191IPR006447Myb domain, plants
PfamPF002497.9E-9138189IPR001005SANT/Myb domain
PfamPF143791.1E-20222267IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MVCECLEQGL LDSSDGAGVP LLEGSEAAAE AGAVVAMNEL EPVPASDVYG AGAEWLQWTQ  60
FVPQDESLAK CWTEIIDVEQ DDGPTLLQTT RTAPVSAPPP VVEKRSSTYT GAVSAACPGS  120
PSLSSGAAPS VSAPGKTRLR WTPELHEKFI TAVAHLGGAD RATPKAVMGL MGVQGITIYH  180
VKSHLQKYRL ARYMPEITEE QKAERRRTES LLTPLEISSS YQITQALQMQ MEVQKKLHEQ  240
LEVQRELQLR IEAQGQSLQK MIEAQAKVGG MLLDKIPDST AVALAPTPVS IGPAASPLPD  300
TGPEALPEGS CPETPNPTTS DVLCTNEINK REPIEATTID NMPIDEPLIK RARIDEGCLQ  360
ASQSAHPKPK VSTTIYSSSQ AVQGQRPSHL MDEKSLSDGQ ITKGTPQRLP QQSHAPCVTQ  420
HPGPVARTPV QA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-24135193159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-24135193159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-24135193159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-24135193159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-24135193159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-24135193159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-24135193159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-24135193159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.118480.0protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369627.10.0myb family transcription factor PHL7-like isoform X1
TrEMBLA0A2K1KX820.0A0A2K1KX82_PHYPA; Uncharacterized protein
TrEMBLA9SSA80.0A9SSA8_PHYPA; Predicted protein
STRINGPP1S112_141V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-57G2-like family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]