PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c3_34860V3.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 299aa MW: 32894 Da PI: 4.5838 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 55.5 | 1.3e-17 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++ade+v +i+ +Pvl+ska elf+ +l +++ + +t+ ++++v+ +fdfl +iv + Pp3c3_34860V3.5.p 6 DTRFPAARIKKIMQADEEVGKIAMATPVLISKALELFLQNLCDKTYEITLRRGAKTMSSFHLKQCVQTNSVFDFLQEIVSK 86 5789*************************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.9E-27 | 2 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.97E-20 | 3 | 88 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-17 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 299 aa Download sequence Send to blast |
MKKKLDTRFP AARIKKIMQA DEEVGKIAMA TPVLISKALE LFLQNLCDKT YEITLRRGAK 60 TMSSFHLKQC VQTNSVFDFL QEIVSKVPDI GTETTCDERN GGRRRKQSDG DDSDEEEVVK 120 RPKSEDQSTS GRGRGRGRGR GRGRGRGRGS NGTPSSRSNG VEKAEDSEDA EMDTYSPSPD 180 RENVILDPIV HKPRPKSEEA AARDASPTSS GHTKSPKLLG FDLNMDLDEN GEVAAGADEA 240 TVNEEEVEHD GSNVPTQDLD VDSENVLGGT LHLQRSELRP SLHPDEDDYD CEDEDEYN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 2e-22 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 137 | 147 | RGRGRGRGRGR |
2 | 139 | 148 | RGRGRGRGRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369582.1 | 0.0 | dr1-associated corepressor-like isoform X2 | ||||
TrEMBL | A0A2K1KX73 | 0.0 | A0A2K1KX73_PHYPA; Uncharacterized protein | ||||
STRING | PP1S112_139V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12480.1 | 2e-50 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c3_34860V3.5.p |