PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_34860V3.4.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

NF-YC

Protein Properties

Length: 280aa MW: 30518.1 Da PI: 4.376

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_34860V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	34.6	4.2e-11	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++ade+v +i+ +Pvl+ska elf+ +l +++ + +t+ ++++v+ +fdfl +iv + Pp3c3_34860V3.4.p 1 MQADEEVGKIAMATPVLISKALELFLQNLCDKTYEITLRRGAKTMSSFHLKQCVQTNSVFDFLQEIVSK 69 899**************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	1.3E-10	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.6E-18	1	68	IPR009072	Histone-fold
SuperFamily	SSF47113	5.82E-19	1	71	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MQADEEVGKI AMATPVLISK ALELFLQNLC DKTYEITLRR GAKTMSSFHL KQCVQTNSVF 60 DFLQEIVSKV PDIGTETTCD ERNGGRRRKQ SDGDDSDEEE VVKRPKSEDQ STSGRGRGRG 120 RGRGRGRGRG RGSNGTPSSR SNGVEKAEDS EDAEMDTYSP SPDRENVILD PIVHKPRPKS 180 EEAAARDASP TSSGHTKSPK LLGFDLNMDL DENGEVAAGA DEATVNEEEV EHDGSNVPTQ 240 DLDVDSENVL GGTLHLQRSE LRPSLHPDED DYDCEDEDG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	5e-16	1	55	21	75	Transcription Regulator NC2 alpha chain

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	130	RGRGRGRGRGR
2	122	131	RGRGRGRGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024369582.1	0.0	dr1-associated corepressor-like isoform X2
TrEMBL	A0A2K1KX73	0.0	A0A2K1KX73_PHYPA; Uncharacterized protein
STRING	PP1S112_139V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	7e-38	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Pp3c3_34860V3.4.p