PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_34860V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | NF-YC | ||||||||
Protein Properties | Length: 282aa MW: 30867.4 Da PI: 4.354 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 34.6 | 4.2e-11 | 1 | 69 | 30 | 98 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++ade+v +i+ +Pvl+ska elf+ +l +++ + +t+ ++++v+ +fdfl +iv + Pp3c3_34860V3.3.p 1 MQADEEVGKIAMATPVLISKALELFLQNLCDKTYEITLRRGAKTMSSFHLKQCVQTNSVFDFLQEIVSK 69 899**************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 1.3E-10 | 1 | 54 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.6E-18 | 1 | 68 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.82E-19 | 1 | 71 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MQADEEVGKI AMATPVLISK ALELFLQNLC DKTYEITLRR GAKTMSSFHL KQCVQTNSVF 60 DFLQEIVSKV PDIGTETTCD ERNGGRRRKQ SDGDDSDEEE VVKRPKSEDQ STSGRGRGRG 120 RGRGRGRGRG RGSNGTPSSR SNGVEKAEDS EDAEMDTYSP SPDRENVILD PIVHKPRPKS 180 EEAAARDASP TSSGHTKSPK LLGFDLNMDL DENGEVAAGA DEATVNEEEV EHDGSNVPTQ 240 DLDVDSENVL GGTLHLQRSE LRPSLHPDED DYDCEDEDEY N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 5e-16 | 1 | 55 | 21 | 75 | Transcription Regulator NC2 alpha chain |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 130 | RGRGRGRGRGR |
2 | 122 | 131 | RGRGRGRGRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369582.1 | 0.0 | dr1-associated corepressor-like isoform X2 | ||||
TrEMBL | A0A2K1KX73 | 0.0 | A0A2K1KX73_PHYPA; Uncharacterized protein | ||||
STRING | PP1S112_139V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 7e-38 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_34860V3.3.p |