PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_34250V3.2.p

Common Name

PHYPADRAFT_233972

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

HRT-like

Protein Properties

Length: 487aa MW: 54041.3 Da PI: 10.146

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_34250V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	43.9	3.9e-14	312	341	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv+++ G++C PvkgRKRC HKGmR+ Pp3c3_34250V3.2.p 312 CGVLTDKGIPCDVAPVKGRKRCLHHKGMRV 341 *****************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00719	0.00111	103	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0025017	anatomy	plant spore
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MGVLFYSRTS EEVLVQQRSE WSGVKRRLRR EDCEYVKHDK LFSKWKILVG PSDWSEHSAG 60 KDGIDRYHLH NLPASHFGPG VYELGVTAPS WTPTSHSQRR RSLKREDVLA VYVGQADNIR 120 QRLQQYGQAG SHLEGSGSTK YCRGNDDSVS CGSSSSLRSQ SGDQSGVKRS NSSPRLFSEV 180 FALGSSVAFR WAHTDSKVMA EQVESELLAV FDYAWNKGSN GNRRSRDILA KLFMSWPTND 240 PFCKPVFSGK KFLLCGTNAV GIKVALRKPQ DTSSNSNKSM INTNPCFCMQ MQSPVPANVL 300 TPGKTASMEL RCGVLTDKGI PCDVAPVKGR KRCLHHKGMR VRGVPAAGHP PLVKYTIMDD 360 SMGRVKRESV KVGEGSVCLP IGLQSFFSAK TRIDRNKVPE DEPGERRPLS LSFNTWMKVE 420 SERVHDGLDS SWSCPNGEVK SSLISLYKAS KQDRGQHSGI NAIPNRKVRQ PSCKYTPVPV 480 DDSKRR*

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MGVLFYSRTS EEVLVQQRSE WSGVKRRLRR EDCEYVKHDK LFSKWKILVG PSDWSEHSAG  60
KDGIDRYHLH NLPASHFGPG VYELGVTAPS WTPTSHSQRR RSLKREDVLA VYVGQADNIR  120
QRLQQYGQAG SHLEGSGSTK YCRGNDDSVS CGSSSSLRSQ SGDQSGVKRS NSSPRLFSEV  180
FALGSSVAFR WAHTDSKVMA EQVESELLAV FDYAWNKGSN GNRRSRDILA KLFMSWPTND  240
PFCKPVFSGK KFLLCGTNAV GIKVALRKPQ DTSSNSNKSM INTNPCFCMQ MQSPVPANVL  300
TPGKTASMEL RCGVLTDKGI PCDVAPVKGR KRCLHHKGMR VRGVPAAGHP PLVKYTIMDD  360
SMGRVKRESV KVGEGSVCLP IGLQSFFSAK TRIDRNKVPE DEPGERRPLS LSFNTWMKVE  420
SERVHDGLDS SWSCPNGEVK SSLISLYKAS KQDRGQHSGI NAIPNRKVRQ PSCKYTPVPV  480
DDSKRR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.16275	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024371204.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A2K1KX46	0.0	A0A2K1KX46_PHYPA; Uncharacterized protein
STRING	PP1S112_53V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	3e-52	effector of transcription2

Link Out ? help Back to Top
Phytozome	Pp3c3_34250V3.2.p
Entrez Gene	5932430

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]