PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c3_33220V3.17.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 460aa MW: 48663.6 Da PI: 6.8452 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.4 | 1.7e-13 | 44 | 88 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E+++++da +++ + Wk+I + +g +t q++s+ qky Pp3c3_33220V3.17.p 44 RESWTEQEHDKFLDALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 88 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.32E-16 | 38 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.062 | 39 | 93 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.8E-18 | 42 | 91 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.8E-6 | 42 | 94 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-10 | 43 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-11 | 44 | 88 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.04E-8 | 46 | 89 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 460 aa Download sequence Send to blast |
MNAAGSEMLG VMVAGSTVPG MTSVSVSEEG SKKIRKPYTI TKSRESWTEQ EHDKFLDALQ 60 LFDRDWKKIE AFVGSKTVIQ IRSHAQKYFL KVQKNRTGEH VPPPRPKRKS AQPYPQKASK 120 CAQLQVSDGL RTHSGQTESS HGTCSRIPSM SPASPSVSAW VQQSVSPNTS ISYDAPGTKP 180 EVGGVSLTSV RASSNSISGS SPGGWPHVVS ASPLAPDSCI RAAPDFAEVY KFIGSVFDPI 240 VSGHLRTLKE MAAIDRETVL LLMRNLSINL SSPDFDEHKL FMPVIDKNVI REKPSEAEDS 300 TSIPGAVPQP CSQDAGEATT CVSGQGGTPA PSTPLLVGPR SGDSDHSQQK ASLLQTFADN 360 TTDAETPRRH SYDGGGTMSA SYTSCCVSPA SPGILEPGST GLPTSTALQP QSPVLTSEPE 420 SVYSLPRLPS LPSLPSLPSL PSLPAGLVGD GIGVDNWWT* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.15688 | 0.0 | gametophore| protonema |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024371361.1 | 0.0 | protein REVEILLE 8-like isoform X3 | ||||
Swissprot | Q8H0W3 | 2e-84 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A2K1KX44 | 0.0 | A0A2K1KX44_PHYPA; Uncharacterized protein | ||||
STRING | PP1S198_135V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52660.2 | 2e-83 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c3_33220V3.17.p |
Publications ? help Back to Top | |||
---|---|---|---|
|