PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_33220V3.15.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB_related | ||||||||
Protein Properties | Length: 453aa MW: 48002.9 Da PI: 7.0414 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.4 | 1.6e-13 | 37 | 81 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E+++++da +++ + Wk+I + +g +t q++s+ qky Pp3c3_33220V3.15.p 37 RESWTEQEHDKFLDALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 81 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.32E-16 | 31 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.062 | 32 | 86 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-6 | 35 | 87 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-18 | 35 | 84 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.0E-10 | 36 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-11 | 37 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.88E-8 | 39 | 82 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MLGVMVAGST VPGMTSVSVS EEGSKKIRKP YTITKSRESW TEQEHDKFLD ALQLFDRDWK 60 KIEAFVGSKT VIQIRSHAQK YFLKVQKNRT GEHVPPPRPK RKSAQPYPQK ASKCAQLQVS 120 DGLRTHSGQT ESSHGTCSRI PSMSPASPSV SAWVQQSVSP NTSISYDAPG TKPEVGGVSL 180 TSVRASSNSI SGSSPGGWPH VVSASPLAPD SCIRAAPDFA EVYKFIGSVF DPIVSGHLRT 240 LKEMAAIDRE TVLLLMRNLS INLSSPDFDE HKLFMPVIDK NVIREKPSEA EDSTSIPGAV 300 PQPCSQDAGE ATTCVSGQGG TPAPSTPLLV GPRSGDSDHS QQKASLLQTF ADNTTDAETP 360 RRHSYDGGGT MSASYTSCCV SPASPGILEP GSTGLPTSTA LQPQSPVLTS EPESVYSLPR 420 LPSLPSLPSL PSLPSLPAGL VGDGIGVDNW WT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.15688 | 0.0 | gametophore| protonema |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024371361.1 | 0.0 | protein REVEILLE 8-like isoform X3 | ||||
Swissprot | Q8H0W3 | 2e-84 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A2K1KX44 | 0.0 | A0A2K1KX44_PHYPA; Uncharacterized protein | ||||
STRING | PP1S198_135V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 1e-83 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_33220V3.15.p |
Publications ? help Back to Top | |||
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