PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c3_31980V3.8.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 389aa MW: 42785.5 Da PI: 8.1206 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.6 | 6.7e-28 | 73 | 123 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++ rqvtfskRr g+lKKA+EL vLCdaeva++ifsstgkl+ey+s Pp3c3_31980V3.8.p 73 KKIENTTSRQVTFSKRRGGLLKKAHELAVLCDAEVALVIFSSTGKLFEYAS 123 68***********************************************86 PP | |||||||
2 | K-box | 80.7 | 3.5e-27 | 143 | 232 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + a + + e+ kL++++e+L+ ++Rh+lGedL+ L++ +L qLeqqL+ + +++R++Kn+l+le++e l++ke+el +n++Lr+kl+ Pp3c3_31980V3.8.p 143 NGARNDFMGCEVVKLREQLEQLKASHRHMLGEDLSLLKVPDLLQLEQQLDLGASRVRARKNQLILEEVESLRRKEHELLIANEDLRQKLA 232 5566778889******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.884 | 65 | 125 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.5E-42 | 65 | 124 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.57E-44 | 66 | 143 | No hit | No description |
SuperFamily | SSF55455 | 3.4E-32 | 66 | 143 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 67 | 121 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-30 | 67 | 87 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-25 | 74 | 121 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-30 | 87 | 102 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-30 | 102 | 123 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 15.351 | 147 | 237 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.5E-24 | 147 | 231 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 389 aa Download sequence Send to blast |
MTASGQSCKQ WQFGAVPSTA TQESSSEIIL HGDCEVPTYL SLGVACGTGG DSTYSTESRS 60 KGRVMGRGKI EIKKIENTTS RQVTFSKRRG GLLKKAHELA VLCDAEVALV IFSSTGKLFE 120 YASSGSIRDI IDRYKKGSDG MQNGARNDFM GCEVVKLREQ LEQLKASHRH MLGEDLSLLK 180 VPDLLQLEQQ LDLGASRVRA RKNQLILEEV ESLRRKEHEL LIANEDLRQK LADAQGIADA 240 VTARANVSES PRPLTSALTR DIVMSSQQQE VTVHPHPNLR DAQRSQTSLQ LGMFSSESYL 300 PSSSRGPSEH PIPVGPEGCA GESAMRWEHP HFHSQNRLHA NISPSADHCP LRDSLHAVIH 360 LRLPEGPALK HHFGSRLMIL DRNRLGLL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-19 | 65 | 124 | 1 | 60 | MEF2C |
5f28_B | 2e-19 | 65 | 124 | 1 | 60 | MEF2C |
5f28_C | 2e-19 | 65 | 124 | 1 | 60 | MEF2C |
5f28_D | 2e-19 | 65 | 124 | 1 | 60 | MEF2C |
6byy_A | 2e-19 | 65 | 160 | 1 | 93 | MEF2 CHIMERA |
6byy_B | 2e-19 | 65 | 160 | 1 | 93 | MEF2 CHIMERA |
6byy_C | 2e-19 | 65 | 160 | 1 | 93 | MEF2 CHIMERA |
6byy_D | 2e-19 | 65 | 160 | 1 | 93 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppa.13332 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF150933 | 0.0 | AF150933.1 Physcomitrella patens MADS-domain protein PPM2 (ppm2) mRNA, complete cds. | |||
GenBank | AJ419328 | 0.0 | AJ419328.1 Physcomitrella patens mRNA for putative MADS-domain transcription factor (m2 gene). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024371895.1 | 0.0 | MADS-box protein GGM13-like isoform X1 | ||||
Refseq | XP_024371896.1 | 0.0 | MADS-box protein GGM13-like isoform X1 | ||||
Refseq | XP_024371897.1 | 0.0 | MADS-box protein GGM13-like isoform X1 | ||||
Refseq | XP_024371898.1 | 0.0 | MADS-box protein GGM13-like isoform X1 | ||||
TrEMBL | A0A2K1KWU8 | 0.0 | A0A2K1KWU8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S55_304V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G58780.1 | 2e-49 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c3_31980V3.8.p |