PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_31810V3.2.p
Common NamePHYPADRAFT_235382, PPMA9
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family M-type_MADS
Protein Properties Length: 418aa    MW: 47481.4 Da    PI: 8.4381
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_31810V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.43.3e-27959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ien +nrqvt+skRrng++KKA+ELSvLCd++ a+i+fs++gkl  ys+
  Pp3c3_31810V3.2.p  9 KKIENPTNRQVTYSKRRNGLIKKAYELSVLCDIDLALIMFSPSGKLTQYSN 59
                       68***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.4E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.128161IPR002100Transcription factor, MADS-box
CDDcd002652.18E-36271No hitNo description
SuperFamilySSF554551.7E-30286IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-26323IPR002100Transcription factor, MADS-box
PfamPF003193.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.159138236IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGRVKLEIKK IENPTNRQVT YSKRRNGLIK KAYELSVLCD IDLALIMFSP SGKLTQYSNC  60
SIEDVIGRFA NLPMHERNKS FEDMLARFAN FHMIHDRNKY TRKIENLENL HKALKKLSGE  120
KDPATNQPYL FGSKSYEVGL LQEELKKSQQ EKELVQQRAR LYLADEQLLQ SVTSVQQLAN  180
METELEQALE RVRARKTYVS SAYQTANVMQ RQQREFLGNS CHQMMAMRQQ QQQQQQHHHQ  240
QRANMAGTQS SFLQWSMAER GEATLQDFME QQTNPAAALM PTPLASREVP SSGETNPTSF  300
FGSASQPTLQ SLGHIHILGN NRGLNMHDMA MDQTSAQYDD QKKAKLEVDM GFASSTSNEA  360
VTEAAADSFT NQSEHVSATA SNWHQAHHHT QAYTSPQYPT SYFTQISSKF SMLVPKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A2e-17270169MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B2e-17270169MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C2e-17270169MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D2e-17270169MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024369816.10.0agamous-like MADS-box protein AGL104
TrEMBLA9S8B50.0A9S8B5_PHYPA; MIKC MADS-domain protein PPMA9
STRINGPP1S55_284V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.14e-35AGAMOUS-like 104
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]