PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_31770V3.3.p
Common NameMADS3, PHYPADRAFT_209690, PpMADS3
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family M-type_MADS
Protein Properties Length: 395aa    MW: 44382.9 Da    PI: 7.4737
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_31770V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.12.1e-27959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ien +nrqvtfskRrng++KKA+ELSvLCd++ a+i+fs++gkl  y++
  Pp3c3_31770V3.3.p  9 KKIENPTNRQVTFSKRRNGLIKKAYELSVLCDIDLALIMFSPSGKLTQYCN 59
                       68***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.296161IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-38160IPR002100Transcription factor, MADS-box
CDDcd002655.35E-38273No hitNo description
SuperFamilySSF554554.06E-32293IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-26323IPR002100Transcription factor, MADS-box
PfamPF003198.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.56117216IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGRVKLEIKK IENPTNRQVT FSKRRNGLIK KAYELSVLCD IDLALIMFSP SGKLTQYCNC  60
SIEEVIARFA NLPMHERNKR KVENLEQLQR ALKKLAEEHG LAASQDHLSG SKSTYEIELL  120
QQELKKAQQE KELVQQRARL YLADEQLLQG VTSVPQLANM ESELEQALER VRARKNYVSS  180
AYQNVIQRQQ HEFLGNSLQM MALRQQQSQQ AQQQQAGMTP SQVPYMHWTM QQERPEPTPQ  240
DFMEQQTNPA APLMHASLNR EPGSNGESNP GVGYFPSGPQ PSNMETLRQI GMGGVSRGLT  300
MHEMSLEQPN VAQYSEEQKK AKVEASMGFV TSTSAGPVGA EAVSKTNFSR EQQPEQAHGT  360
VSASEWPPHP ANHHPHAYGN GSLFFSQNEH HAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-19190190MEF2 CHIMERA
6byy_B4e-19190190MEF2 CHIMERA
6byy_C4e-19190190MEF2 CHIMERA
6byy_D4e-19190190MEF2 CHIMERA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0676900.0AB067690.1 Physcomitrella patens PpMADS3 mRNA for MADS-box protein PpMADS3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372215.10.0transcription factor CAULIFLOWER-like
TrEMBLQ6R7780.0Q6R778_PHYPA; MIKC MADS-domain protein PpMADS3
STRINGPP1S55_280V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-35AGAMOUS-like 104
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]