PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_31770V3.2.p
Common NameMADS3, PHYPADRAFT_209690, PpMADS3
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family M-type_MADS
Protein Properties Length: 417aa    MW: 47101.9 Da    PI: 7.5443
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_31770V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.92.2e-27959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+ien +nrqvtfskRrng++KKA+ELSvLCd++ a+i+fs++gkl  y++
  Pp3c3_31770V3.2.p  9 KKIENPTNRQVTFSKRRNGLIKKAYELSVLCDIDLALIMFSPSGKLTQYCN 59
                       68***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.296161IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-31286IPR002100Transcription factor, MADS-box
CDDcd002658.89E-38273No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-26323IPR002100Transcription factor, MADS-box
PfamPF003198.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.56139238IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MGRVKLEIKK IENPTNRQVT FSKRRNGLIK KAYELSVLCD IDLALIMFSP SGKLTQYCNC  60
SIEEVIARFA NLPMHERNKS FEDMLARFSN NHMHHDRSKY NRKVENLEQL QRALKKLAEE  120
HGLAASQDHL SGSKSTYEIE LLQQELKKAQ QEKELVQQRA RLYLADEQLL QGVTSVPQLA  180
NMESELEQAL ERVRARKNYV SSAYQNVIQR QQHEFLGNSL QMMALRQQQS QQAQQQQAGM  240
TPSQVPYMHW TMQQERPEPT PQDFMEQQTN PAAPLMHASL NREPGSNGES NPGVGYFPSG  300
PQPSNMETLR QIGMGGVSRG LTMHEMSLEQ PNVAQYSEEQ KKAKVEASMG FVTSTSAGPV  360
GAEAVSKTNF SREQQPEQAH GTVSASEWPP HPANHHPHAY GNGSLFFSQN EHHAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A3e-18269168Myocyte-specific enhancer factor 2A
3mu6_B3e-18269168Myocyte-specific enhancer factor 2A
3mu6_C3e-18269168Myocyte-specific enhancer factor 2A
3mu6_D3e-18269168Myocyte-specific enhancer factor 2A
6byy_A7e-18185185MEF2 CHIMERA
6byy_B7e-18185185MEF2 CHIMERA
6byy_C7e-18185185MEF2 CHIMERA
6byy_D7e-18185185MEF2 CHIMERA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0676900.0AB067690.1 Physcomitrella patens PpMADS3 mRNA for MADS-box protein PpMADS3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372215.10.0transcription factor CAULIFLOWER-like
TrEMBLQ6R7780.0Q6R778_PHYPA; MIKC MADS-domain protein PpMADS3
STRINGPP1S55_280V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-34AGAMOUS-like 104
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]