PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_31500V3.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 24903 Da PI: 5.4455 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.6e-19 | 42 | 92 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr + +g+Wv+eIr+p +kr r++lg+f tae+Aa+a++aa +l+g Pp3c3_31500V3.2.p 42 PKFRGVRMRQ-WGKWVSEIREP---NKRSRIWLGSFPTAEMAARAYDAAVVCLRG 92 79*****998.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.96E-33 | 42 | 102 | No hit | No description |
Pfam | PF00847 | 7.3E-12 | 42 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-22 | 43 | 102 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.8E-32 | 43 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-38 | 43 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.051 | 43 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 44 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 66 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MVEKNRSQRA ATEVRVGARH YLAPVKKDLK SAVKNEETTA SPKFRGVRMR QWGKWVSEIR 60 EPNKRSRIWL GSFPTAEMAA RAYDAAVVCL RGPGATLNFP DSPPQLLPEC NSPKDIQVAA 120 AAAAAAAKPC TPVALPAKAK MQLLSAQLIS VKNGTNLSPS SHQTPAESDC SGTTGEGSSR 180 SGAKSEITQD EELDFTGESS SPVVAEEFVS LEDVELAWED AKFDDINFLD L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 43 | 100 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.11016 | 0.0 | gametophore| protonema |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369554.1 | 1e-170 | ethylene-responsive transcription factor ERF022-like | ||||
TrEMBL | A0A2K1KWV1 | 1e-169 | A0A2K1KWV1_PHYPA; Uncharacterized protein | ||||
STRING | PP1S55_256V6.1 | 1e-169 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 7e-32 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_31500V3.2.p |