PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_31490V3.2.p | ||||||||
Common Name | PHYPADRAFT_182268 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 262aa MW: 28069.6 Da PI: 7.2114 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 47 | 96 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr + +g+Wv+eIr+p +kr r++lg+f tae+Aaka++aa+ +l+g Pp3c3_31490V3.2.p 47 VYKGVRMRT-WGKWVSEIREP---NKRSRIWLGSFPTAEMAAKAYDAAAVCLRG 96 7*****998.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.2E-35 | 47 | 110 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.813 | 47 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-31 | 47 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-21 | 47 | 106 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.5E-12 | 47 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.28E-21 | 48 | 106 | No hit | No description |
PRINTS | PR00367 | 2.2E-9 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-9 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0025017 | anatomy | plant spore | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MVEKVVVSSL RVKRGGNLLA PLKRNVSSIA KKSSTPKSGK PVGSPKVYKG VRMRTWGKWV 60 SEIREPNKRS RIWLGSFPTA EMAAKAYDAA AVCLRGRSVK LNFPDSPPRC AARCNSPREV 120 QAAATAAAVA CIPSATALTV ANFQSPAQTL ESSPLHSSPS SSDMSSGDED SGEDSVQSFV 180 AEGSQISPSE VVPVLEWVKV EFGDKETVAA GDVDFDCDYS FISEFAADSL LACSYNSKGR 240 TEYLPIETHD AALYDSTLWF F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-16 | 37 | 104 | 3 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.8663 | 0.0 | gametophore| sporophyte |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00657 | PBM | 25215497 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ202211 | 0.0 | DQ202211.2 Physcomitrella patens transcriptional factor DBF1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369918.1 | 0.0 | ethylene-responsive transcription factor ERF043-like | ||||
TrEMBL | A9S898 | 0.0 | A9S898_PHYPA; Predicted protein | ||||
STRING | PP1S55_253V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 7e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_31490V3.2.p |
Entrez Gene | 5925711 |
Publications ? help Back to Top | |||
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