PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_31490V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | ERF | ||||||||
Protein Properties | Length: 217aa MW: 23373 Da PI: 4.364 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.7 | 4.6e-16 | 7 | 51 | 8 | 55 |
AP2 8 wdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++r+rWv+eIr+p +kr r++lg+f tae+Aaka++aa+ +l+g Pp3c3_31490V3.1.p 7 RNPQRQRWVSEIREP---NKRSRIWLGSFPTAEMAAKAYDAAAVCLRG 51 5899**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 18.044 | 1 | 59 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-9 | 7 | 51 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-22 | 7 | 65 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.39E-14 | 10 | 61 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.8E-24 | 10 | 61 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-16 | 10 | 61 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MCPALLRNPQ RQRWVSEIRE PNKRSRIWLG SFPTAEMAAK AYDAAAVCLR GRSVKLNFPD 60 SPPRCAARCN SPREVQAAAT AAAVACIPSA TALTVANFQS PAQTLESSPL HSSPSSSDMS 120 SGDEDSGEDS VQSFVAEGSQ ISPSEVVPVL EWVKVEFGDK ETVAAGDVDF DCDYSFISEF 180 AADSLLACSY NSKGRTEYLP IETHDAALYD STLWFF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.8663 | 0.0 | gametophore| sporophyte |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00657 | PBM | 25215497 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ202211 | 0.0 | DQ202211.2 Physcomitrella patens transcriptional factor DBF1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369918.1 | 1e-147 | ethylene-responsive transcription factor ERF043-like | ||||
TrEMBL | A0A2K1KWR0 | 1e-157 | A0A2K1KWR0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S55_253V6.1 | 1e-147 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 8e-14 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_31490V3.1.p |