PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_31330V3.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | SBP | ||||||||
Protein Properties | Length: 803aa MW: 87540 Da PI: 6.3713 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 111.9 | 3.8e-35 | 129 | 206 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C adl+ +k yh+rh+vC +++++++v+++++ +r+CqqC++fh ls+fDe+krsCr +L++hn+rrr+k + Pp3c3_31330V3.3.p 129 RCQVPACGADLAGLKGYHQRHRVCLQCANSTTVILRDIPHRYCQQCGKFHVLSDFDEGKRSCRFKLERHNNRRRRKVQ 206 6************************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.7E-26 | 124 | 191 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 27.453 | 127 | 204 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.55E-30 | 128 | 207 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.3E-25 | 130 | 204 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055070 | Biological Process | copper ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 803 aa Download sequence Send to blast |
MGHLDDSVAG WEWDSVLLLA NPSLDTSPLQ SSLQAHSSLD YITDFAVGQS WAGLGSLQTS 60 SPKPPDGKVA AGPQSSSSAE KTTTSDYELF RDPRLDCPNF LAGRVPCACT DEDDDEGGSR 120 SKRAKVSARC QVPACGADLA GLKGYHQRHR VCLQCANSTT VILRDIPHRY CQQCGKFHVL 180 SDFDEGKRSC RFKLERHNNR RRRKVQESGE DGATPGGGSD KASLNSGGGR VNGDENSAVE 240 SKAHAEVEQS VVVQVSKEAS SPVEQSDTTD TTQILSAGIV DGSGSRTDGA QEALSAPRSK 300 EYTMPGPNVS GIAESAPLWN STETPGGVSN GHKSGVDEDS LLALLLEDSP NVDERLPSRG 360 FESTSPIPPR SSKKPSAYAS SHPTARISFK LYDWNPGDFP RNLRQQILEW LSNMPVDLEG 420 YIRSGCTILT LFISMPQSMW EGLNADWEGA VARLVCNPQN TSGFWEKGYF KAKLGRQTVH 480 FENGKAVNRS GGKEDCMPCM PVLQSVEPVC FRAGTGCMLS ITGRNLLQAN TKLLMSHGGK 540 YIKAWVLKAS SEGKQEDKWQ IVVPPVDECQ AGPVFIEVEN EDRLSNIMVV LVGDAEFCNE 600 VESMELYTSS CEAQDLLFDL GWMLKESTLD SGVLIQRLRS LLDYANAKGW ERVAERILEA 660 ADRRGVLRKL VGAADARSFD WRNIWAESTG HSHSTYKLSS FAVPVSSRSY SMPSLAQSKR 720 DADEHTHIVV CNSSSKDLTT TSLLPQRGMR EKRRSPWGRN TYRLVFAVAS ATAACAGLCV 780 VLQHPEQVAQ LSTSLRRCLW SN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 1e-34 | 128 | 209 | 4 | 85 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.3519 | 0.0 | gametophore| protonema| sporophyte |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00604 | PBM | Transfer from AT5G18830 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF016491 | 0.0 | EF016491.1 Physcomitrella patens SBP-domain protein 5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024372070.1 | 0.0 | squamosa promoter-binding-like protein 9 isoform X1 | ||||
Refseq | XP_024372072.1 | 0.0 | squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A2K1KWR8 | 0.0 | A0A2K1KWR8_PHYPA; Uncharacterized protein | ||||
STRING | PP1S55_237V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.3 | 1e-47 | squamosa promoter binding protein-like 7 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_31330V3.3.p |