PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_31330V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family SBP
Protein Properties Length: 803aa    MW: 87540 Da    PI: 6.3713
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_31330V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP111.93.8e-35129206178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cqv++C adl+ +k yh+rh+vC +++++++v+++++ +r+CqqC++fh ls+fDe+krsCr +L++hn+rrr+k +
  Pp3c3_31330V3.2.p 129 RCQVPACGADLAGLKGYHQRHRVCLQCANSTTVILRDIPHRYCQQCGKFHVLSDFDEGKRSCRFKLERHNNRRRRKVQ 206
                        6************************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.7E-26124191IPR004333Transcription factor, SBP-box
PROSITE profilePS5114127.453127204IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.55E-30128207IPR004333Transcription factor, SBP-box
PfamPF031101.3E-25130204IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MGHLDDSVAG WEWDSVLLLA NPSLDTSPLQ SSLQAHSSLD YITDFAVGQS WAGLGSLQTS  60
SPKPPDGKVA AGPQSSSSAE KTTTSDYELF RDPRLDCPNF LAGRVPCACT DEDDDEGGSR  120
SKRAKVSARC QVPACGADLA GLKGYHQRHR VCLQCANSTT VILRDIPHRY CQQCGKFHVL  180
SDFDEGKRSC RFKLERHNNR RRRKVQESGE DGATPGGGSD KASLNSGGGR VNGDENSAVE  240
SKAHAEVEQS VVVQVSKEAS SPVEQSDTTD TTQILSAGIV DGSGSRTDGA QEALSAPRSK  300
EYTMPGPNVS GIAESAPLWN STETPGGVSN GHKSGVDEDS LLALLLEDSP NVDERLPSRG  360
FESTSPIPPR SSKKPSAYAS SHPTARISFK LYDWNPGDFP RNLRQQILEW LSNMPVDLEG  420
YIRSGCTILT LFISMPQSMW EGLNADWEGA VARLVCNPQN TSGFWEKGYF KAKLGRQTVH  480
FENGKAVNRS GGKEDCMPCM PVLQSVEPVC FRAGTGCMLS ITGRNLLQAN TKLLMSHGGK  540
YIKAWVLKAS SEGKQEDKWQ IVVPPVDECQ AGPVFIEVEN EDRLSNIMVV LVGDAEFCNE  600
VESMELYTSS CEAQDLLFDL GWMLKESTLD SGVLIQRLRS LLDYANAKGW ERVAERILEA  660
ADRRGVLRKL VGAADARSFD WRNIWAESTG HSHSTYKLSS FAVPVSSRSY SMPSLAQSKR  720
DADEHTHIVV CNSSSKDLTT TSLLPQRGMR EKRRSPWGRN TYRLVFAVAS ATAACAGLCV  780
VLQHPEQVAQ LSTSLRRCLW SN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A1e-34128209485squamosa promoter binding protein-like 7
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.35190.0gametophore| protonema| sporophyte
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0164910.0EF016491.1 Physcomitrella patens SBP-domain protein 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024372070.10.0squamosa promoter-binding-like protein 9 isoform X1
RefseqXP_024372072.10.0squamosa promoter-binding-like protein 9
TrEMBLA0A2K1KWR80.0A0A2K1KWR8_PHYPA; Uncharacterized protein
STRINGPP1S55_237V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP48281320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.31e-47squamosa promoter binding protein-like 7