PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_30710V3.4.p

Common Name

PHYPADRAFT_163410

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 420aa MW: 47024.2 Da PI: 6.5079

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_30710V3.4.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	31.2	4.9e-10	1	20	36	55
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m+vkgLt++hvkSHLQ+YR+ Pp3c3_30710V3.4.p 1 MDVKGLTIAHVKSHLQMYRS 20 9******************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-9	1	22	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MDVKGLTIAH VKSHLQMYRS MKNDENGQNG LEQTDQMIED HGTSDTTLVH TSLGPQRRDQ 60 FQGHASHVRD SDVTSKPIFP NFVHRHSGIL QLLDHRSAVS RHDGHGEWSN LAFSQYGPPT 120 GHRDWPDDEF QMRWRKREQN LARGTHVTGN TYSDQSGIDL HEDRWSSKPS YSVPSDWEKK 180 FQKSHNIGLG FSAYQERPWL QSGGVAPTMA ASQQSNSLKR QESTASEWDR WQGQGGRQDD 240 WSRQSKHNVS DEPTSTLGDS RIHLKQLLDH SCSSSNVEEK QQCAREDEVT LQTTKWPAVF 300 EIRDQSTPDG YADSCRHAFA EDHAGISSPW SIMQRSEPGT ASTLSNNREL DGTLSLYPYS 360 SRTAQSSSPV LKSQQSMSFP HIGDDHHEYH SSLGPSKTVQ LSSSQGITLD LTMSTGAPC*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MDVKGLTIAH VKSHLQMYRS MKNDENGQNG LEQTDQMIED HGTSDTTLVH TSLGPQRRDQ  60
FQGHASHVRD SDVTSKPIFP NFVHRHSGIL QLLDHRSAVS RHDGHGEWSN LAFSQYGPPT  120
GHRDWPDDEF QMRWRKREQN LARGTHVTGN TYSDQSGIDL HEDRWSSKPS YSVPSDWEKK  180
FQKSHNIGLG FSAYQERPWL QSGGVAPTMA ASQQSNSLKR QESTASEWDR WQGQGGRQDD  240
WSRQSKHNVS DEPTSTLGDS RIHLKQLLDH SCSSSNVEEK QQCAREDEVT LQTTKWPAVF  300
EIRDQSTPDG YADSCRHAFA EDHAGISSPW SIMQRSEPGT ASTLSNNREL DGTLSLYPYS  360
SRTAQSSSPV LKSQQSMSFP HIGDDHHEYH SSLGPSKTVQ LSSSQGITLD LTMSTGAPC*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.6116	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024370994.1	0.0	uncharacterized protein LOC112280132
TrEMBL	A0A2K1KWR3	0.0	A0A2K1KWR3_PHYPA; Uncharacterized protein
STRING	PP1S55_182V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-07	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c3_30710V3.4.p
Entrez Gene	5925811

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]