PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_30710V3.1.p

Common Name

PHYPADRAFT_163410

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 548aa MW: 60765.3 Da PI: 7.2019

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_30710V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.1	1.7e-32	95	148	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv ave+LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+ Pp3c3_30710V3.1.p 95 PRLRWTPDLHQCFVVAVERLGGQDRATPKLVLQLMDVKGLTIAHVKSHLQMYRS 148 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.3E-32	91	150	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.391	91	151	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-15	93	151	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-23	95	149	IPR006447	Myb domain, plants
Pfam	PF00249	3.5E-8	96	147	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence Send to blast
MRTTGSTQGC QNTNGMQGQV EYSSGSDGVH PGRKWGGDNF RKRNSSSSGE YTPERSSESQ 60 NASGGSPRTG YQGGFSGGSG KTGGTVRQYV RSKMPRLRWT PDLHQCFVVA VERLGGQDRA 120 TPKLVLQLMD VKGLTIAHVK SHLQMYRSMK NDENGQNGLE QTDQMIEDHG TSDTTLVHTS 180 LGPQRRDQFQ GHASHVRDSD VTSKPIFPNF VHRHSGILQL LDHRSAVSRH DGHGEWSNLA 240 FSQYGPPTGH RDWPDDEFQM RWRKREQNLA RGTHVTGNTY SDQSGIDLHE DRWSSKPSYS 300 VPSDWEKKFQ KSHNIGLGFS AYQERPWLQS GGVAPTMAAS QQSNSLKRQE STASEWDRWQ 360 GQGGRQDDWS RQSKHNVSDE PTSTLGDSRI HLKQLLDHSC SSSNVEEKQQ CAREDEVTLQ 420 TTKWPAVFEI RDQSTPDGYA DSCRHAFAED HAGISSPWSI MQRSEPGTAS TLSNNRELDG 480 TLSLYPYSSR TAQSSSPVLK SQQSMSFPHI GDDHHEYHSS LGPSKTVQLS SSQGITLDLT 540 MSTGAPC*

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence Send to blast

MRTTGSTQGC QNTNGMQGQV EYSSGSDGVH PGRKWGGDNF RKRNSSSSGE YTPERSSESQ  60
NASGGSPRTG YQGGFSGGSG KTGGTVRQYV RSKMPRLRWT PDLHQCFVVA VERLGGQDRA  120
TPKLVLQLMD VKGLTIAHVK SHLQMYRSMK NDENGQNGLE QTDQMIEDHG TSDTTLVHTS  180
LGPQRRDQFQ GHASHVRDSD VTSKPIFPNF VHRHSGILQL LDHRSAVSRH DGHGEWSNLA  240
FSQYGPPTGH RDWPDDEFQM RWRKREQNLA RGTHVTGNTY SDQSGIDLHE DRWSSKPSYS  300
VPSDWEKKFQ KSHNIGLGFS AYQERPWLQS GGVAPTMAAS QQSNSLKRQE STASEWDRWQ  360
GQGGRQDDWS RQSKHNVSDE PTSTLGDSRI HLKQLLDHSC SSSNVEEKQQ CAREDEVTLQ  420
TTKWPAVFEI RDQSTPDGYA DSCRHAFAED HAGISSPWSI MQRSEPGTAS TLSNNRELDG  480
TLSLYPYSSR TAQSSSPVLK SQQSMSFPHI GDDHHEYHSS LGPSKTVQLS SSQGITLDLT  540
MSTGAPC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-17	96	150	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	96	150	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	96	150	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	96	150	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.6116	0.0	gametophore\| protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024370994.1	0.0	uncharacterized protein LOC112280132
TrEMBL	A0A2K1KWR3	0.0	A0A2K1KWR3_PHYPA; Uncharacterized protein
STRING	PP1S55_182V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-31	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c3_30710V3.1.p
Entrez Gene	5925811

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]