PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_3030V3.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | GRAS | ||||||||
Protein Properties | Length: 77aa MW: 8364.7 Da PI: 6.6673 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 28.9 | 1.4e-09 | 47 | 75 | 90 | 118 |
GRAS 90 ilkfshltaNqaIleavegeervHiiDfd 118 +f++l+ Nqa+l+a+ege+ vHi+D++ Pp3c3_3030V3.1.p 47 ARQFAFLMGNQAVLDAMEGEKVVHIVDLE 75 679************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 8.656 | 1 | 76 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.8E-7 | 47 | 75 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
RAHCNHLGTQ TKNSIPPINC MEMGPWPGLY KALHSTHLPS VLDIISARQF AFLMGNQAVL 60 DAMEGEKVVH IVDLEA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.919 | 4e-34 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024381004.1 | 6e-24 | scarecrow-like protein 3 | ||||
Refseq | XP_024381005.1 | 6e-24 | scarecrow-like protein 3 | ||||
Refseq | XP_024381006.1 | 6e-24 | scarecrow-like protein 3 | ||||
TrEMBL | A0A2K1KT44 | 2e-50 | A0A2K1KT44_PHYPA; Uncharacterized protein (Fragment) | ||||
STRING | PP1S130_153V6.1 | 2e-23 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 3e-11 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_3030V3.1.p |