PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_30010V3.9.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 868aa MW: 94548.3 Da PI: 6.3743 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 52.4 | 9e-17 | 6 | 64 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r +L k+ +++ +q+kvWFqNrR +ek+ Pp3c3_30010V3.9.p 6 KYVRYTNEQVEALERVYHECPKPSSIRRHQLIKESpilaNIEPKQIKVWFQNRRCREKQ 64 5678******************************9999*******************97 PP | |||||||
2 | START | 148.8 | 5e-47 | 192 | 398 | 2 | 203 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 +aee+++++++ka+ ++ W +++ +++g++ + +++ s+++ g a+ra+g+v ++ v e+l+d++ W+++++++e+l v+ ++ g++ Pp3c3_30010V3.9.p 192 IAEETLTDFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLVALDAS-KVTEVLKDRPAWQQDCRRMEVLGVLPTAngGTI 282 68999*****************************************************.8888888888****************9999*** PP EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS START 92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179 +l +++++a+++l++ Rd+ ++Ry+ l++g +vi+++S++ q+ p +s+vR+e++pSg+li+p+++g++ +++v+h d + +++++ Pp3c3_30010V3.9.p 283 ELLYTQMYAPTTLASaRDYCTLRYTTILEDGNLVICERSLIGGQNGPPmppVQSFVRGEMFPSGYLIRPSDGGGCIIHVVDHYDNERWSVPE 374 ********************************************999888899*************************************** PP HHHHHHHHHHHHHHHHHHHHTXXX CS START 180 llrslvksglaegaktwvatlqrq 203 +lr+l++s ++ +++ + a+l+++ Pp3c3_30010V3.9.p 375 VLRPLYESPAVLAQRSTIAALRHL 398 ********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.467 | 1 | 65 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-14 | 3 | 69 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-16 | 4 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.75E-15 | 6 | 66 | No hit | No description |
Pfam | PF00046 | 2.7E-14 | 7 | 64 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-17 | 8 | 64 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 5.02E-4 | 58 | 94 | No hit | No description |
PROSITE profile | PS50848 | 22.668 | 182 | 382 | IPR002913 | START domain |
CDD | cd08875 | 1.28E-74 | 186 | 402 | No hit | No description |
SMART | SM00234 | 3.5E-36 | 191 | 401 | IPR002913 | START domain |
Pfam | PF01852 | 3.0E-44 | 192 | 398 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.5E-21 | 192 | 396 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 7.0E-34 | 192 | 401 | No hit | No description |
Pfam | PF08670 | 1.5E-42 | 723 | 865 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 868 aa Download sequence Send to blast |
MDSSGKYVRY TNEQVEALER VYHECPKPSS IRRHQLIKES PILANIEPKQ IKVWFQNRRC 60 REKQRKEASR LVSVNAKLTA LNKLLMEENE RLAKHTSQLT LENHALRQQL PGLPLTDGRH 120 RLSSQNALKK EGAVNGGDES STQGGICVRI HGQAGVASTD TSCDSAVTGG LPHRLTPQHS 180 PRDTSPAGLL AIAEETLTDF LAKATGTAVD WIQLPGMKPG PDAIGIIAIS HGCVGIAARA 240 CGLVALDASK VTEVLKDRPA WQQDCRRMEV LGVLPTANGG TIELLYTQMY APTTLASARD 300 YCTLRYTTIL EDGNLVICER SLIGGQNGPP MPPVQSFVRG EMFPSGYLIR PSDGGGCIIH 360 VVDHYDNERW SVPEVLRPLY ESPAVLAQRS TIAALRHLRR LASEESGEGN PRNGQHPVVL 420 RTLSQRLAKG FKNAVNGFGD DGWVSTVSDG LEDVSVMLNA TPKSMEGQIA SDKLLYSLGG 480 GILCAKASML LQNVSPSLLI GFLREHRSEW ADFDIDANVA TSFRSNGNSY ARGGGVSHVQ 540 LPLPLAHSGE HGEILEVVKL EGHSSVQHMV LSRDSFLLQL CSGIDENAVG ASAQLIFAPV 600 DVALAEDIPL LPSGFCVSPI DASVVGGFDL DRTLDLASTL EGGSDLRLNG DTKSNGTSGQ 660 MRSVLTIAFQ FAYEVHTRET CAVMARQYVR TVVASVQRVA MALAPSRAPA PLRQAPSNPD 720 AISLVRHVLS SYRLHLALDL TRPENRGDEA LFKAFWHHTD AIVCCAWKGM PEFVFANRSG 780 LEMFETTTSS LQDLDWDKTL NENECELSYT TFTQVLQQDY CSLPAGVRMS STGRTTTYER 840 ALAWKVLDDN EAVECIAFLF INWSFVT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.7821 | 0.0 | gametophore| protonema| sporophyte |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ657201 | 0.0 | DQ657201.1 Physcomitrella patens class III HD-Zip protein HB11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024370814.1 | 0.0 | homeobox-leucine zipper protein HOX32-like isoform X1 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | Q0Q430 | 0.0 | Q0Q430_PHYPA; Class III HD-Zip protein HB11 | ||||
STRING | PP1S55_99V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.2 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_30010V3.9.p |
Publications ? help Back to Top | |||
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