PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_30010V3.7.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 881aa    MW: 96066 Da    PI: 6.375
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_30010V3.7.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.49.1e-171977357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le++++++++ps  +r +L k+     +++ +q+kvWFqNrR +ek+
  Pp3c3_30010V3.7.p 19 KYVRYTNEQVEALERVYHECPKPSSIRRHQLIKESpilaNIEPKQIKVWFQNRRCREKQ 77
                       5678******************************9999*******************97 PP
2START148.75.1e-472054112203
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++++++ka+ ++  W +++ +++g++ + +++ s+++ g a+ra+g+v  ++   v e+l+d++ W+++++++e+l v+ ++  g++
  Pp3c3_30010V3.7.p 205 IAEETLTDFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLVALDAS-KVTEVLKDRPAWQQDCRRMEVLGVLPTAngGTI 295
                        68999*****************************************************.8888888888****************9999*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++++a+++l++ Rd+ ++Ry+  l++g +vi+++S++  q+ p     +s+vR+e++pSg+li+p+++g++ +++v+h d + +++++
  Pp3c3_30010V3.7.p 296 ELLYTQMYAPTTLASaRDYCTLRYTTILEDGNLVICERSLIGGQNGPPmppVQSFVRGEMFPSGYLIRPSDGGGCIIHVVDHYDNERWSVPE 387
                        ********************************************999888899*************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXX CS
              START 180 llrslvksglaegaktwvatlqrq 203
                        +lr+l++s ++ +++ + a+l+++
  Pp3c3_30010V3.7.p 388 VLRPLYESPAVLAQRSTIAALRHL 411
                        ********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4671478IPR001356Homeobox domain
SuperFamilySSF466894.71E-161581IPR009057Homeodomain-like
SMARTSM003893.7E-141682IPR001356Homeobox domain
CDDcd000861.79E-151979No hitNo description
PfamPF000462.7E-142077IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-172177IPR009057Homeodomain-like
CDDcd146865.11E-471107No hitNo description
PROSITE profilePS5084822.668195395IPR002913START domain
CDDcd088751.55E-74199415No hitNo description
SMARTSM002343.5E-36204414IPR002913START domain
SuperFamilySSF559617.14E-34205414No hitNo description
PfamPF018523.1E-44205411IPR002913START domain
Gene3DG3DSA:3.30.530.201.5E-21205409IPR023393START-like domain
PfamPF086701.6E-42736878IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MGGRLKESWN EQTMDSSGKY VRYTNEQVEA LERVYHECPK PSSIRRHQLI KESPILANIE  60
PKQIKVWFQN RRCREKQRKE ASRLVSVNAK LTALNKLLME ENERLAKHTS QLTLENHALR  120
QQLPGLPLTD GRHRLSSQNA LKKEGAVNGG DESSTQGGIC VRIHGQAGVA STDTSCDSAV  180
TGGLPHRLTP QHSPRDTSPA GLLAIAEETL TDFLAKATGT AVDWIQLPGM KPGPDAIGII  240
AISHGCVGIA ARACGLVALD ASKVTEVLKD RPAWQQDCRR MEVLGVLPTA NGGTIELLYT  300
QMYAPTTLAS ARDYCTLRYT TILEDGNLVI CERSLIGGQN GPPMPPVQSF VRGEMFPSGY  360
LIRPSDGGGC IIHVVDHYDN ERWSVPEVLR PLYESPAVLA QRSTIAALRH LRRLASEESG  420
EGNPRNGQHP VVLRTLSQRL AKGFKNAVNG FGDDGWVSTV SDGLEDVSVM LNATPKSMEG  480
QIASDKLLYS LGGGILCAKA SMLLQNVSPS LLIGFLREHR SEWADFDIDA NVATSFRSNG  540
NSYARGGGVS HVQLPLPLAH SGEHGEILEV VKLEGHSSVQ HMVLSRDSFL LQLCSGIDEN  600
AVGASAQLIF APVDVALAED IPLLPSGFCV SPIDASVVGG FDLDRTLDLA STLEGGSDLR  660
LNGDTKSNGT SGQMRSVLTI AFQFAYEVHT RETCAVMARQ YVRTVVASVQ RVAMALAPSR  720
APAPLRQAPS NPDAISLVRH VLSSYRLHLA LDLTRPENRG DEALFKAFWH HTDAIVCCAW  780
KGMPEFVFAN RSGLEMFETT TSSLQDLDWD KTLNENECEL SYTTFTQVLQ QDYCSLPAGV  840
RMSSTGRTTT YERALAWKVL DDNEAVECIA FLFINWSFVT *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.78210.0gametophore| protonema| sporophyte
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6572010.0DQ657201.1 Physcomitrella patens class III HD-Zip protein HB11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370815.10.0homeobox-leucine zipper protein HOX32-like isoform X2
RefseqXP_024370816.10.0homeobox-leucine zipper protein HOX32-like isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ0Q4300.0Q0Q430_PHYPA; Class III HD-Zip protein HB11
STRINGPP1S55_99V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Prigge MJ,Clark SE
    Evolution of the class III HD-Zip gene family in land plants.
    Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61
    [PMID:16805899]
  3. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]