PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_30010V3.4.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HD-ZIP
Protein Properties Length: 868aa    MW: 94548.3 Da    PI: 6.3743
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_30010V3.4.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.49e-17664357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le++++++++ps  +r +L k+     +++ +q+kvWFqNrR +ek+
  Pp3c3_30010V3.4.p  6 KYVRYTNEQVEALERVYHECPKPSSIRRHQLIKESpilaNIEPKQIKVWFQNRRCREKQ 64
                       5678******************************9999*******************97 PP
2START148.85e-471923982203
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++++++ka+ ++  W +++ +++g++ + +++ s+++ g a+ra+g+v  ++   v e+l+d++ W+++++++e+l v+ ++  g++
  Pp3c3_30010V3.4.p 192 IAEETLTDFLAKATGTAVDWIQLPGMKPGPDAIGIIAISHGCVGIAARACGLVALDAS-KVTEVLKDRPAWQQDCRRMEVLGVLPTAngGTI 282
                        68999*****************************************************.8888888888****************9999*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++++a+++l++ Rd+ ++Ry+  l++g +vi+++S++  q+ p     +s+vR+e++pSg+li+p+++g++ +++v+h d + +++++
  Pp3c3_30010V3.4.p 283 ELLYTQMYAPTTLASaRDYCTLRYTTILEDGNLVICERSLIGGQNGPPmppVQSFVRGEMFPSGYLIRPSDGGGCIIHVVDHYDNERWSVPE 374
                        ********************************************999888899*************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXX CS
              START 180 llrslvksglaegaktwvatlqrq 203
                        +lr+l++s ++ +++ + a+l+++
  Pp3c3_30010V3.4.p 375 VLRPLYESPAVLAQRSTIAALRHL 398
                        ********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.467165IPR001356Homeobox domain
SMARTSM003893.7E-14369IPR001356Homeobox domain
SuperFamilySSF466895.99E-16468IPR009057Homeodomain-like
CDDcd000861.75E-15666No hitNo description
PfamPF000462.7E-14764IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-17864IPR009057Homeodomain-like
CDDcd146865.02E-45894No hitNo description
PROSITE profilePS5084822.668182382IPR002913START domain
CDDcd088751.28E-74186402No hitNo description
SMARTSM002343.5E-36191401IPR002913START domain
PfamPF018523.0E-44192398IPR002913START domain
Gene3DG3DSA:3.30.530.201.5E-21192396IPR023393START-like domain
SuperFamilySSF559617.0E-34192401No hitNo description
PfamPF086701.5E-42723865IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MDSSGKYVRY TNEQVEALER VYHECPKPSS IRRHQLIKES PILANIEPKQ IKVWFQNRRC  60
REKQRKEASR LVSVNAKLTA LNKLLMEENE RLAKHTSQLT LENHALRQQL PGLPLTDGRH  120
RLSSQNALKK EGAVNGGDES STQGGICVRI HGQAGVASTD TSCDSAVTGG LPHRLTPQHS  180
PRDTSPAGLL AIAEETLTDF LAKATGTAVD WIQLPGMKPG PDAIGIIAIS HGCVGIAARA  240
CGLVALDASK VTEVLKDRPA WQQDCRRMEV LGVLPTANGG TIELLYTQMY APTTLASARD  300
YCTLRYTTIL EDGNLVICER SLIGGQNGPP MPPVQSFVRG EMFPSGYLIR PSDGGGCIIH  360
VVDHYDNERW SVPEVLRPLY ESPAVLAQRS TIAALRHLRR LASEESGEGN PRNGQHPVVL  420
RTLSQRLAKG FKNAVNGFGD DGWVSTVSDG LEDVSVMLNA TPKSMEGQIA SDKLLYSLGG  480
GILCAKASML LQNVSPSLLI GFLREHRSEW ADFDIDANVA TSFRSNGNSY ARGGGVSHVQ  540
LPLPLAHSGE HGEILEVVKL EGHSSVQHMV LSRDSFLLQL CSGIDENAVG ASAQLIFAPV  600
DVALAEDIPL LPSGFCVSPI DASVVGGFDL DRTLDLASTL EGGSDLRLNG DTKSNGTSGQ  660
MRSVLTIAFQ FAYEVHTRET CAVMARQYVR TVVASVQRVA MALAPSRAPA PLRQAPSNPD  720
AISLVRHVLS SYRLHLALDL TRPENRGDEA LFKAFWHHTD AIVCCAWKGM PEFVFANRSG  780
LEMFETTTSS LQDLDWDKTL NENECELSYT TFTQVLQQDY CSLPAGVRMS STGRTTTYER  840
ALAWKVLDDN EAVECIAFLF INWSFVT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.78210.0gametophore| protonema| sporophyte
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6572010.0DQ657201.1 Physcomitrella patens class III HD-Zip protein HB11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370814.10.0homeobox-leucine zipper protein HOX32-like isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLQ0Q4300.0Q0Q430_PHYPA; Class III HD-Zip protein HB11
STRINGPP1S55_99V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Prigge MJ,Clark SE
    Evolution of the class III HD-Zip gene family in land plants.
    Evol. Dev., 2006 Jul-Aug. 8(4): p. 350-61
    [PMID:16805899]
  3. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  4. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]