PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_28970V3.1.p

Common Name

PHYPADRAFT_163362

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

bHLH

Protein Properties

Length: 466aa MW: 50441.3 Da PI: 5.5339

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_28970V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.1	3.1e-08	343	383	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Pp3c3_28970V3.1.p 343 ARHRRERISDRIRVLQRLVPGG-----TKMDTASMLDEAIHYVKFL 383 699***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.447	334	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.7E-13	335	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.27E-11	336	388	No hit	No description
SuperFamily	SSF47459	1.31E-13	338	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-13	340	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-5	344	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MTLSLRPDDR SALRTMEKWS NSGAGWSNHQ HPMLESSISP LFNYTQSHNG LQSQSMFLHP 60 MGAAEQQALV QAFVQANVGC MMDQPSQSGC GNLDSLLKSS NSSSMVDSSA SEMTSPDDDC 120 TGAPENNLHM NCIPSLGGGP VSPVLTSMLD RTASNGASLM AAHPQSKNDF FRMRSPGGPL 180 SPGASACAES EDSLHGGEAC APAMTGLKRR SFEGDDGDWM VDQMHLSQKV EKQHHQQQPE 240 KALAFQESFG GYNVEVASTV GLTATYSDSL TIPSLMQPSP QPFLRSSGNC GAASPVDLDE 300 FASMRAILFR HASQPVPSLE EIASSRPKRR NVRISKDPQS VAARHRRERI SDRIRVLQRL 360 VPGGTKMDTA SMLDEAIHYV KFLKLQLQTL EQIGNNGCDP RSFLEQGGAT EELANLVRPF 420 DLNCTAAFQT WPPQTTTMVN HGDTSPQGHN STEWACEANQ DDCPM*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MTLSLRPDDR SALRTMEKWS NSGAGWSNHQ HPMLESSISP LFNYTQSHNG LQSQSMFLHP  60
MGAAEQQALV QAFVQANVGC MMDQPSQSGC GNLDSLLKSS NSSSMVDSSA SEMTSPDDDC  120
TGAPENNLHM NCIPSLGGGP VSPVLTSMLD RTASNGASLM AAHPQSKNDF FRMRSPGGPL  180
SPGASACAES EDSLHGGEAC APAMTGLKRR SFEGDDGDWM VDQMHLSQKV EKQHHQQQPE  240
KALAFQESFG GYNVEVASTV GLTATYSDSL TIPSLMQPSP QPFLRSSGNC GAASPVDLDE  300
FASMRAILFR HASQPVPSLE EIASSRPKRR NVRISKDPQS VAARHRRERI SDRIRVLQRL  360
VPGGTKMDTA SMLDEAIHYV KFLKLQLQTL EQIGNNGCDP RSFLEQGGAT EELANLVRPF  420
DLNCTAAFQT WPPQTTTMVN HGDTSPQGHN STEWACEANQ DDCPM*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024369340.1	0.0	transcription factor bHLH83-like
TrEMBL	A0A2K1KWE2	0.0	A0A2K1KWE2_PHYPA; Uncharacterized protein
STRING	PP1S55_11V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP761	15	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67060.1	1e-27	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pp3c3_28970V3.1.p
Entrez Gene	5925823

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]