PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_27940V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 685aa    MW: 74177.3 Da    PI: 9.4185
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_27940V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72.1e-32329386260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers+ d++v+ei+Y+g+Hnh+k
  Pp3c3_27940V3.1.p 329 EDGYNWRKYGQKQVKGSEYPRSYYKCTQTNCPMKKKVERSH-DGQVTEIVYKGDHNHPK 386
                        7****************************************.***************85 PP
2WRKY103.79.9e-33491549159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct  gCpv+k+ver+++d k+v++tYeg+Hnh+
  Pp3c3_27940V3.1.p 491 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNVGCPVRKHVERASTDIKAVITTYEGKHNHD 549
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-29324387IPR003657WRKY domain
SuperFamilySSF1182903.66E-25327387IPR003657WRKY domain
SMARTSM007741.2E-35328386IPR003657WRKY domain
PfamPF031061.4E-25329385IPR003657WRKY domain
PROSITE profilePS5081124.34329387IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-37476551IPR003657WRKY domain
SuperFamilySSF1182906.8E-29483551IPR003657WRKY domain
PROSITE profilePS5081138.285486551IPR003657WRKY domain
SMARTSM007741.6E-38491550IPR003657WRKY domain
PfamPF031062.2E-25492549IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MKGEHFGVTK ASSTESGTIL LIKPTPSRQQ PTSSSSMTTH KADSPMSIAS SFLNDQDPEH  60
ELKSFSHLLA GAMSPTAPSN NPTTSNPEEK PSPSMDAVGS NSPARSFAER LAARGAASNK  120
SESATEVGTA ARPPSTNNGS RYNNRPPPSS LPHPRSGSAG GGGGGNGSFL TIPPGLVSPT  180
TLFDPSPVML TNAQSEPSPT TGSFYYNGGM RALSNGSKDN QNANQGNQGF VFKPLGVKTV  240
SRNQMSHLPN LQLFAGMSQQ QAQVMAHMQS RQQQHQQQQQ QQLQQQQQQL SNQSSQRAAV  300
EAENSQDSEQ DNQPPPPMAA PTIMDRPSED GYNWRKYGQK QVKGSEYPRS YYKCTQTNCP  360
MKKKVERSHD GQVTEIVYKG DHNHPKPQPT RRMALSGAHS LSDGLSRDGD GNDSRPDSWV  420
GFQTQGHGGP SSASGSDDDD GSKLSNEDGD DDEQDSKRRK RNDNSKDATA APRTIREPRV  480
VVQTTSDVDI LDDGYRWRKY GQKVVKGNPH PRSYYKCTNV GCPVRKHVER ASTDIKAVIT  540
TYEGKHNHDV PAARNSGHDM AGPVGPPPTA AATALLDQGL RYGRQLPGGY GDVRRGESIA  600
QAISLRDRMR KDDDLYNTAP ISMGLSSNGD HRQGSQAMDG YRSQIMSRPK QEQGDTSSRP  660
SHPNPNSLMY QQNIAHNIAQ GLRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37329552878Probable WRKY transcription factor 4
2lex_A1e-37329552878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Peak of expression 12 days after pollination. {ECO:0000269|PubMed:12953112}.
UniprotTISSUE SPECIFICITY: Expressed in endosperm, but not in leaves. {ECO:0000269|PubMed:12953112}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8896210.0DQ889621.1 Physcomitrella patens clone 5 WKRY transcription factor-like gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371482.10.0probable WRKY transcription factor 58
RefseqXP_024371483.10.0probable WRKY transcription factor 58
SwissprotQ6VWJ62e-96WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A2K1KWE60.0A0A2K1KWE6_PHYPA; Uncharacterized protein
STRINGPP1S157_29V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-85WRKY DNA-binding protein 33