PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pp3c3_25870V3.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 202aa MW: 21800.7 Da PI: 4.4927 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 71 | 2e-22 | 56 | 142 | 4 | 90 |
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 +d lP a +++i+k++lP + +++kda++++ ec +efi +++se+++ c +++++ti+++ +l al lGf +y+ ++++ +++ Pp3c3_25870V3.6.p 56 DDVSLPKATMTKIIKEMLPPDVRVAKDAQDLLVECCVEFINLISSESNEICSKDEKRTIAPEHVLRALEILGFGEYIGEVQAAYEQH 142 6889*************************************************************************9998765555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.6E-37 | 54 | 187 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.35E-33 | 56 | 187 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-21 | 59 | 123 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 202 aa Download sequence Send to blast |
MIVAQYVHLT KYICCKIQDF GFSDLTNIGS NVIDSCLNCY SGVFEAMDTA GSRPKDDVSL 60 PKATMTKIIK EMLPPDVRVA KDAQDLLVEC CVEFINLISS ESNEICSKDE KRTIAPEHVL 120 RALEILGFGE YIGEVQAAYE QHKNESLESP KVGGRWAKEG GGGGMTEEEA IAAQQRMFAE 180 ARARMNSGGA AAPAAQANDS D* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 5e-38 | 56 | 182 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024369783.1 | 1e-117 | protein Dr1 homolog isoform X1 | ||||
Swissprot | P49592 | 2e-70 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A9TQH0 | 1e-109 | A9TQH0_PHYPA; Predicted protein | ||||
STRING | PP1S288_38V6.1 | 1e-110 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3449 | 17 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23090.4 | 3e-62 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pp3c3_25870V3.6.p |
Publications ? help Back to Top | |||
---|---|---|---|
|