PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_25610V3.7.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 480aa    MW: 53928.6 Da    PI: 5.7059
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_25610V3.7.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.64.1e-56221501129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelv++yL+kkv ++++ + ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd++v
  Pp3c3_25610V3.7.p  22 LPPGFRFHPTDEELVSYYLTKKVLDSRFAV-RAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGMRTNRATDAGYWKATGKDRDV 112
                        79**************************99.89***************99999*************************************** PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                        l++ + +l+g+kktLvfy grapkgekt+W+mheyrle
  Pp3c3_25610V3.7.p 113 LAHgRPRLIGMKKTLVFYMGRAPKGEKTNWIMHEYRLE 150
                        *9866678****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-5919159IPR003441NAC domain
PROSITE profilePS5100557.20822229IPR003441NAC domain
PfamPF023651.1E-2823149IPR003441NAC domain
SuperFamilySSF1019411.05E-59217228IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MAAPWHQEPQ GKDQSQRVES FLPPGFRFHP TDEELVSYYL TKKVLDSRFA VRAIAEVDLN  60
KCEPWDLPEK AKMGEKEWYF FSLRDRKYPT GMRTNRATDA GYWKATGKDR DVLAHGRPRL  120
IGMKKTLVFY MGRAPKGEKT NWIMHEYRLE NDGGHPLSPR ANKVDSDYHF NFSLYSRNSL  180
RNLRSARCMS KTFDKNFGCS LGMILFSETF VVIEICTQDE WVVCRIFEKS SGGKRGFSMS  240
ESHMRQGMAY QLEDARSSLP PLMDNESPNP TVIDERTATN CETFVETEQM SCYNRVQDFD  300
HKKEMNCVMS WINVQPAGMD MVPQVGGLSS LDNGLPKPYP GNEICEKSMS LSRQAGFNQQ  360
ALMQSANMTT TTGFRVTSLR PKTEPLSFSE GEDEAQSTQK GCDYVNWPAD LAGASLYQND  420
GTEGDSSSPL QSSTGGTDLS CLTGSLCSGE NMSFDFKYRL QDITAPVDSG HGPEIIGWA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-51121495140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024371500.10.0NAC domain-containing protein 92-like
RefseqXP_024371501.10.0NAC domain-containing protein 92-like
RefseqXP_024371502.10.0NAC domain-containing protein 92-like
TrEMBLA0A2K1KW010.0A0A2K1KW01_PHYPA; Uncharacterized protein
STRINGPP1S288_4V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.11e-74NAC family protein