PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_2470V3.2.p
Common NamePpVNS6
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 369aa    MW: 42012.3 Da    PI: 6.746
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_2470V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.41.7e-5081381128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka....eekewyfFskrdkkyatgkrknratksgyWka 85 
                       +p+GfrFhPtdeelv +yL+ kv +++ +    i+e+d+yk+ePwdL++            ++++wyfFs++dkky++g+r+nrat++g+Wka
  Pp3c3_2470V3.2.p   8 VPVGFRFHPTDEELVGYYLHGKVGRSQRDQ--LIQELDLYKIEPWDLQEvcriG--DdppeNQNDWYFFSHKDKKYPSGNRANRATTAGFWKA 96 
                       599********************9999655..8**************9545440..24444777***************************** PP

               NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       tg+dk++++ +++++g++ktLvfykgrap+g+ktdW+mhe+rl
  Pp3c3_2470V3.2.p  97 TGRDKPIHT-QRHVTGMRKTLVFYKGRAPHGQKTDWIMHEFRL 138
                       *********.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-546161IPR003441NAC domain
PROSITE profilePS5100554.6698161IPR003441NAC domain
PfamPF023655.9E-279138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MNNNNAPVPV GFRFHPTDEE LVGYYLHGKV GRSQRDQLIQ ELDLYKIEPW DLQEVCRIGD  60
DPPENQNDWY FFSHKDKKYP SGNRANRATT AGFWKATGRD KPIHTQRHVT GMRKTLVFYK  120
GRAPHGQKTD WIMHEFRLDE GPGVTLNFES DGWVVCRVFR KVKNLKSQET SCSFEEDQHL  180
LPELMSPANG SGGSNGRGGE EHYNPHLHHH FNFTCKQEIS VDDYRSPIIE NLHHLQELQR  240
SIEDGGLHNS VGPSSSSTFR SLQQMCSNGR FSRDHAEYSV TPFHVESASL IDFDDAKSSV  300
SHESSSFPAL THHDADNWML ECGASKGGPR RDQTLADVTC HVRIKTRQSS DHLSTSTNHE  360
NFVHFWNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-44816117165NO APICAL MERISTEM PROTEIN
1ut4_B1e-44816117165NO APICAL MERISTEM PROTEIN
1ut7_A1e-44816117165NO APICAL MERISTEM PROTEIN
1ut7_B1e-44816117165NO APICAL MERISTEM PROTEIN
3swm_A1e-44816120168NAC domain-containing protein 19
3swm_B1e-44816120168NAC domain-containing protein 19
3swm_C1e-44816120168NAC domain-containing protein 19
3swm_D1e-44816120168NAC domain-containing protein 19
3swp_A1e-44816120168NAC domain-containing protein 19
3swp_B1e-44816120168NAC domain-containing protein 19
3swp_C1e-44816120168NAC domain-containing protein 19
3swp_D1e-44816120168NAC domain-containing protein 19
4dul_A1e-44816117165NAC domain-containing protein 19
4dul_B1e-44816117165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8980860.0AB898086.1 Physcomitrella patens PpVNS6 mRNA for NAC transcription factor PpVNS6, complete cds, ecotype: Gransden 2004.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024370098.10.0NAC domain-containing protein 76-like isoform X1
RefseqXP_024370099.10.0NAC domain-containing protein 76-like isoform X1
RefseqXP_024370100.10.0NAC domain-containing protein 76-like isoform X1
RefseqXP_024370101.10.0NAC domain-containing protein 76-like isoform X1
TrEMBLX5II850.0X5II85_PHYPA; NAC transcription factor PpVNS6
STRINGPP1S1_447V6.10.0(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.12e-70NAC 007
Publications ? help Back to Top
  1. Xu B, et al.
    Contribution of NAC transcription factors to plant adaptation to land.
    Science, 2014. 343(6178): p. 1505-8
    [PMID:24652936]