PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_24664V3.4.p | ||||||||
Common Name | PHYPADRAFT_173346 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | TCP | ||||||||
Protein Properties | Length: 404aa MW: 41200.7 Da PI: 9.1604 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 124.6 | 1.1e-38 | 74 | 203 | 2 | 110 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlq+a++ai+++tgt++++a ++ ++s +ssas Pp3c3_24664V3.4.p 74 PPKRTSTKDRHTKVDGRGRRIRMPATCAARIFQLTRELGHKSDGETIEWLLQKAEQAIIAATGTGTIPAIASsIQGSIRSSAS----Mavaa 161 789*************************************************************9999955543333333333....12223 PP TCP 89 .....................kaaksaakskksqksaasalnl 110 ++++s ++++ ++ s + + Pp3c3_24664V3.4.p 162 agragmhgslglsgpgggptaEEMQSR-MQQEQAQRGRSEWGV 203 444556666777777776653222222.333333333333444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.3E-35 | 78 | 194 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.745 | 80 | 134 | IPR017887 | Transcription factor TCP subgroup |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MAAMGGQGVG GGGGQVESTA LGMAGMGQEY GGGEGQSSGG VGGMGSMSMP GGSGEHQQQQ 60 TQQQVPAAPA KKPPPKRTST KDRHTKVDGR GRRIRMPATC AARIFQLTRE LGHKSDGETI 120 EWLLQKAEQA IIAATGTGTI PAIASSIQGS IRSSASMAVA AAGRAGMHGS LGLSGPGGGP 180 TAEEMQSRMQ QEQAQRGRSE WGVSADERVM DVSRRMSLGH GDPGMSHDLM AGFQHQDLVG 240 GPSEVGEGME SSDSRMRKRP RGGPLQSRMK EDPDQPARPV RTTARQSMQQ QVGQGQHQGG 300 GSSSMMPAAM WAVAPVGAGV SSSGTMPGTI WMLPMSASQG GATQGVMPGQ SEQQIWTFPA 360 ASGQYRMTAA AGTSIQLGPG GSGGSGQGHQ QGDSGDDHTS SHS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.13312 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024371651.1 | 0.0 | transcription factor TCP22-like isoform X3 | ||||
TrEMBL | A9U2R3 | 0.0 | A9U2R3_PHYPA; Predicted protein | ||||
STRING | PP1S446_21V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 1e-27 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_24664V3.4.p |
Entrez Gene | 5948350 |
Publications ? help Back to Top | |||
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