PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c3_24664V3.3.p | ||||||||
Common Name | PHYPADRAFT_173346 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | TCP | ||||||||
Protein Properties | Length: 506aa MW: 51274.2 Da PI: 8.5538 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.7 | 2.1e-38 | 74 | 202 | 2 | 109 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlq+a++ai+++tgt++++a ++ ++s +ssas Pp3c3_24664V3.3.p 74 PPKRTSTKDRHTKVDGRGRRIRMPATCAARIFQLTRELGHKSDGETIEWLLQKAEQAIIAATGTGTIPAIASsIQGSIRSSAS----Mavaa 161 789*************************************************************9999955543333333333....12223 PP TCP 89 .....................kaaksaakskksqksaasaln 109 ++++s ++++ ++ s + Pp3c3_24664V3.3.p 162 agragmhgslglsgpgggptaEEMQSR-MQQEQAQRGRSEWG 202 444556666777777776653222222.33333333333344 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.2E-35 | 78 | 194 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.745 | 80 | 134 | IPR017887 | Transcription factor TCP subgroup |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000006 | anatomy | plant protoplast | ||||
PO:0030003 | anatomy | protonema | ||||
PO:0030018 | anatomy | gametophore |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MAAMGGQGVG GGGGQVESTA LGMAGMGQEY GGGEGQSSGG VGGMGSMSMP GGSGEHQQQQ 60 TQQQVPAAPA KKPPPKRTST KDRHTKVDGR GRRIRMPATC AARIFQLTRE LGHKSDGETI 120 EWLLQKAEQA IIAATGTGTI PAIASSIQGS IRSSASMAVA AAGRAGMHGS LGLSGPGGGP 180 TAEEMQSRMQ QEQAQRGRSE WGVSADERVM DVSRRMSLGH GDPGMSHDLM AGFQHQDLVG 240 GPSEVGEGME SSDSRMRKRP RGGPLQSRMK EDPDQPARPV RTTARQSMQQ QVGQGQHQGG 300 GSSSMMPAAM WAVAPVGAGV SSSGTMPGTI WMLPMSASQG GATQGVMPGQ SEQQIWTFPA 360 ASGQYRMTAA AGTSIQLGPG GSGGSGQGNA PTSSSSGQSM VPLAASVLPS GVALMPRINL 420 QGGMGLELQG SHMGHHMPLG SMLLQQGGQQ MPGTGLGLGG GGGEGHLGML AAMNAYRNLT 480 PDHQSMGGSG HQQGDSGDDH TSSHS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.13312 | 0.0 | protonema |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024371647.1 | 0.0 | transcription factor TCP22-like isoform X1 | ||||
Refseq | XP_024371648.1 | 0.0 | transcription factor TCP22-like isoform X1 | ||||
TrEMBL | A9U2R3 | 0.0 | A9U2R3_PHYPA; Predicted protein | ||||
STRING | PP1S446_21V6.1 | 0.0 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 3e-27 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c3_24664V3.3.p |
Entrez Gene | 5948350 |
Publications ? help Back to Top | |||
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