PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c3_24664V3.2.p

Common Name

PHYPADRAFT_173346

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

TCP

Protein Properties

Length: 439aa MW: 44578.6 Da PI: 9.6501

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c3_24664V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.4	1.3e-38	74	203	2	110
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlq+a++ai+++tgt++++a ++ ++s +ssas Pp3c3_24664V3.2.p 74 PPKRTSTKDRHTKVDGRGRRIRMPATCAARIFQLTRELGHKSDGETIEWLLQKAEQAIIAATGTGTIPAIASsIQGSIRSSAS----Mavaa 161 789*************************************************************9999955543333333333....12223 PP TCP 89 .....................kaaksaakskksqksaasalnl 110 ++++s ++++ ++ s + + Pp3c3_24664V3.2.p 162 agragmhgslglsgpgggptaEEMQSR-MQQEQAQRGRSEWGV 203 444556666777777776653222222.333333333333444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.9E-35	78	194	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.745	80	134	IPR017887	Transcription factor TCP subgroup

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MAAMGGQGVG GGGGQVESTA LGMAGMGQEY GGGEGQSSGG VGGMGSMSMP GGSGEHQQQQ 60 TQQQVPAAPA KKPPPKRTST KDRHTKVDGR GRRIRMPATC AARIFQLTRE LGHKSDGETI 120 EWLLQKAEQA IIAATGTGTI PAIASSIQGS IRSSASMAVA AAGRAGMHGS LGLSGPGGGP 180 TAEEMQSRMQ QEQAQRGRSE WGVSADERVM DVSRRMSLGH GDPGMSHDLM AGFQHQDLVG 240 GPSEVGEGME SSDSRMRKRP RGGPLQSRMK EDPDQPARPV RTTARQSMQQ QVGQGQHQGG 300 GSSSMMPAAM WAVAPVGAGV SSSGTMPGTI WMLPMSASQG GATQGVMPGQ SEQQIWTFPA 360 ASGQYRMTAA AGTSIQLGPG GSGGSGQGNA PTSSSSGQSM VPLAASVLPS GVALMPRINL 420 QGGHQQGDSG DDHTSSHS*

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MAAMGGQGVG GGGGQVESTA LGMAGMGQEY GGGEGQSSGG VGGMGSMSMP GGSGEHQQQQ  60
TQQQVPAAPA KKPPPKRTST KDRHTKVDGR GRRIRMPATC AARIFQLTRE LGHKSDGETI  120
EWLLQKAEQA IIAATGTGTI PAIASSIQGS IRSSASMAVA AAGRAGMHGS LGLSGPGGGP  180
TAEEMQSRMQ QEQAQRGRSE WGVSADERVM DVSRRMSLGH GDPGMSHDLM AGFQHQDLVG  240
GPSEVGEGME SSDSRMRKRP RGGPLQSRMK EDPDQPARPV RTTARQSMQQ QVGQGQHQGG  300
GSSSMMPAAM WAVAPVGAGV SSSGTMPGTI WMLPMSASQG GATQGVMPGQ SEQQIWTFPA  360
ASGQYRMTAA AGTSIQLGPG GSGGSGQGNA PTSSSSGQSM VPLAASVLPS GVALMPRINL  420
QGGHQQGDSG DDHTSSHS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.13312	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024371650.1	0.0	transcription factor TCP22-like isoform X2
TrEMBL	A9U2R3	0.0	A9U2R3_PHYPA; Predicted protein
STRING	PP1S446_21V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-27	TCP family protein

Link Out ? help Back to Top
Phytozome	Pp3c3_24664V3.2.p
Entrez Gene	5948350

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]